Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq48397 147 4e-30 seq5158 114 2e-20 >seq48397 Length=377 Score = 147 bits (162), Expect = 4e-30 Identities = 174/236 (74%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | || || || || || | |||| || || ||| || ||||| Sbjct 119 ATACCACCACGAAGACGGAGAACAAGGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCA 178 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | ||||| ||| ||||||||||| ||||| |||||||| | ||||| || || Sbjct 179 GAAAGGGTTCTGTCATCTTCTAATTGTTTACCGGCGAAAATTAAACGTTGTTGGTCTGGT 238 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| || ||| | || | ||| | |||| | |||||||||||| Sbjct 239 GGAATACCTTCCTTTTCTTGAATCTTGTTCTTAACATTGACAATACTGTCGGAAGACTCA 298 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTATT 193366 || || || |||||||| || || || || ||||| || || |||||||| ||||| Sbjct 299 ACCTCAAGGGTTATAGTCTTTCCAGTAAGGGTTTTGACGAAAATTTGCATCTTATT 354 >seq5158 Length=501596 Score = 114 bits (126), Expect = 2e-20 Identities = 168/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 193123 TAATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATAT 193182 ||||||| || || |||| ||| ||||| ||||| | ||| | ||| || || | Sbjct 429096 TAATTTACTGTCCTCCCCTCAGTCGGAGTACAAGATGGAGTGTGGACTCCTTCTGGATGT 429155 Query 193183 TATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTT 193242 | ||||| || | || | ||| || | ||||| || ||||| || | | ||| | Sbjct 429156 TGTAGTCAGAGAGTGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATAAGACGCTGCT 429215 Query 193243 GATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGG 193302 | || || || ||||||||||| || || ||||| | || | |||| ||||| || | Sbjct 429216 GGTCTGGGGGAATTCCTTCTTTGTCCTGGATTTTAGCCTTCACATTTTCAATAGAGTCTG 429275 Query 193303 AAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | | ||||| || || || || ||||| ||||| || ||||||||||| |||||||| Sbjct 429276 ATGGTTCAACCTCAAGGGTGATGGTTTTCCCTGTGAGGGTTTTTACAAAGATTTGCAT 429333 Score = 114 bits (126), Expect = 2e-20 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || || || |||| ||| ||||| ||||| | ||| | ||| || || || Sbjct 429326 ATTTGCATCCCTCCCCTCAGTCGGAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTG 429385 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || | || | ||| || | ||||| || ||||| || | | ||| || Sbjct 429386 TAGTCAGAAAGTGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATAAGACGCTGCTGG 429445 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || ||||||||||| || || ||||| | || | |||| ||||| || || Sbjct 429446 TCTGGGGGAATTCCTTCTTTGTCCTGGATTTTAGCCTTCACATTTTCAATAGAGTCTGAT 429505 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||| || || || || ||||| ||||| || ||||||||||| |||||||| Sbjct 429506 GGTTCAACCTCAAGGGTGATGGTTTTCCCTGTGAGGGTTTTTACAAAGATTTGCAT 429561 Score = 114 bits (126), Expect = 2e-20 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || || || |||| ||| ||||| ||||| | ||| | ||| || || || Sbjct 429554 ATTTGCATCCCTCCCCTCAGTCGGAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTG 429613 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || | || | ||| || | ||||| || ||||| || | | ||| || Sbjct 429614 TAGTCAGAAAGTGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATAAGACGCTGCTGG 429673 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || ||||||||||| || || ||||| | || | |||| ||||| || || Sbjct 429674 TCTGGGGGAATTCCTTCTTTGTCCTGGATTTTAGCCTTCACATTTTCAATAGAGTCTGAT 429733 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||| || || || || ||||| ||||| || ||||||||||| |||||||| Sbjct 429734 GGTTCAACCTCAAGGGTGATGGTTTTCCCTGTGAGGGTTTTTACAAAGATTTGCAT 429789 Score = 114 bits (126), Expect = 2e-20 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || || || |||| ||| ||||| ||||| | ||| | ||| || || || Sbjct 429782 ATTTGCATCCCTCCCCTCAGTCGGAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTG 429841 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || | || | ||| || | ||||| || ||||| || | | ||| || Sbjct 429842 TAGTCAGAAAGTGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATAAGACGCTGCTGG 429901 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || ||||||||||| || || ||||| | || | |||| ||||| || || Sbjct 429902 TCTGGGGGAATTCCTTCTTTGTCCTGGATTTTAGCCTTCACATTTTCAATAGAGTCTGAT 429961 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||| || || || || ||||| ||||| || ||||||||||| |||||||| Sbjct 429962 GGTTCAACCTCAAGGGTGATGGTTTTCCCTGTGAGGGTTTTTACAAAGATTTGCAT 430017 Score = 114 bits (126), Expect = 2e-20 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || || || |||| ||| ||||| ||||| | ||| | ||| || || || Sbjct 430010 ATTTGCATCCCTCCCCTCAGTCGGAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTG 430069 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || | || | ||| || | ||||| || ||||| || | | ||| || Sbjct 430070 TAGTCAGAAAGTGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATAAGACGCTGCTGG 430129 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || ||||||||||| || || ||||| | || | |||| ||||| || || Sbjct 430130 TCTGGGGGAATTCCTTCTTTGTCCTGGATTTTAGCCTTCACATTTTCAATAGAGTCTGAT 430189 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||| || || || || ||||| ||||| || ||||||||||| |||||||| Sbjct 430190 GGTTCAACCTCAAGGGTGATGGTTTTCCCTGTGAGGGTTTTTACAAAGATTTGCAT 430245 Score = 114 bits (126), Expect = 2e-20 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || || || |||| ||| ||||| ||||| | ||| | ||| || || || Sbjct 430238 ATTTGCATCCCTCCCCTCAGTCGGAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTG 430297 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || | || | ||| || | || || || ||||| || | | ||| || Sbjct 430298 TAGTCAGAAAGTGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGG 430357 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || ||||||||||| || || ||||| | |||| |||| ||||| || || Sbjct 430358 TCTGGGGGAATTCCTTCTTTGTCCTGGATTTTAGCCTTTACATTTTCAATAGAGTCTGAT 430417 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||| || || || |||||||| ||||| || ||||||||||| || ||||| Sbjct 430418 GGTTCAACCTCAAGGGTGATAGTTTTTCCTGTGAGGGTTTTTACAAAGATCTGCAT 430473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898724854582560