Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq53685 127 4e-24 seq48397 120 6e-22 seq5158 118 2e-21 seq4225 104 5e-17 >seq53685 Length=437 Score = 127 bits (140), Expect = 4e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | | ||| | || | ||||||||||| || || ||| || |||||||| Sbjct 197 ACCACCACGTAAACGAAGGACAAGATGTAAAGTAGATTCCTTTTGGATGTTGTAATCAGA 256 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | || || |||| || ||||| |||||||| || || | | ||||| || ||||| Sbjct 257 AAGGGTACGACCATCTTCTAATTGCTTACCAGCGAAAATAAGACGTTGTTGGTCTGGTGG 316 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || ||||| |||||||| |||||| ||| ||||| |||| || || ||||| || Sbjct 317 GATACCTTCCTTATCTTGAATTTTAGCTTTGACATTTTCAATAGTGTCGGAGGATTCAAC 376 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || |||||||| ||||| || | ||||| | ||| || ||||| Sbjct 377 CTCAAGGGTAATGGTCTTACCCGTAAGGGTTTTGACAAAGATTTGCAT 424 >seq48397 Length=377 Score = 120 bits (132), Expect = 6e-22 Identities = 175/245 (71%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCT-CTTTAGAGATA 192357 ||| |||||||||||| | |||||| | || | || | ||||| | |||| || || Sbjct 111 GTTCAATAATACCACCACGAAGACGGAGAACAAGGTGAAGAGTAGATTCCTTTTGA-ATG 169 Query 192358 TTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGT 192417 || || ||||| | |||| ||||| || ||||||||||| || || ||||| | ||| Sbjct 170 TTGTAGTCAGAAAGGGTTCTGTCATCTTCTAATTGTTTACCGGCGAAAATTAAACGTTGT 229 Query 192418 TGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCT 192477 || || ||||| || ||||| || ||||| || || || || ||||| ||| || Sbjct 230 TGGTCTGGTGGAATACCTTCCTTTTCTTGAATCTTGTTCTTAACATTGACAATACTGTCG 289 Query 192478 GACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || || || || || || || || || ||||| | ||||| | || || ||||| Sbjct 290 GAAGACTCAACCTCAAGGGTTATAGTCTTTCCAGTAAGGGTTTTGACGAAAATTTGCATC 349 Query 192538 TTATT 192542 ||||| Sbjct 350 TTATT 354 >seq5158 Length=501596 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || || || || || | ||| | ||| | || | ||| || ||| || || ||| Sbjct 429332 ATCCCTCCCCTCAGTCGGAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCA 429391 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| || |||| |||| ||||||||||||||||| | | ||| || || || Sbjct 429392 GAAAGTGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATAAGACGCTGCTGGTCTGGG 429451 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| || || |||||| || ||||| ||||| ||||| | ||| Sbjct 429452 GGAATTCCTTCTTTGTCCTGGATTTTAGCCTTCACATTTTCAATAGAGTCTGATGGTTCA 429511 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || |||||||| || || | ||||| | ||| || ||||| Sbjct 429512 ACCTCAAGGGTGATGGTTTTCCCTGTGAGGGTTTTTACAAAGATTTGCAT 429561 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || || || || || | ||| | ||| | || | ||| || ||| || || ||| Sbjct 429560 ATCCCTCCCCTCAGTCGGAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCA 429619 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| || |||| |||| ||||||||||||||||| | | ||| || || || Sbjct 429620 GAAAGTGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATAAGACGCTGCTGGTCTGGG 429679 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| || || |||||| || ||||| ||||| ||||| | ||| Sbjct 429680 GGAATTCCTTCTTTGTCCTGGATTTTAGCCTTCACATTTTCAATAGAGTCTGATGGTTCA 429739 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || |||||||| || || | ||||| | ||| || ||||| Sbjct 429740 ACCTCAAGGGTGATGGTTTTCCCTGTGAGGGTTTTTACAAAGATTTGCAT 429789 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || || || || || | ||| | ||| | || | ||| || ||| || || ||| Sbjct 429788 ATCCCTCCCCTCAGTCGGAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCA 429847 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| || |||| |||| ||||||||||||||||| | | ||| || || || Sbjct 429848 GAAAGTGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATAAGACGCTGCTGGTCTGGG 429907 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| || || |||||| || ||||| ||||| ||||| | ||| Sbjct 429908 GGAATTCCTTCTTTGTCCTGGATTTTAGCCTTCACATTTTCAATAGAGTCTGATGGTTCA 429967 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || |||||||| || || | ||||| | ||| || ||||| Sbjct 429968 ACCTCAAGGGTGATGGTTTTCCCTGTGAGGGTTTTTACAAAGATTTGCAT 430017 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || || || || || | ||| | ||| | || | ||| || ||| || || ||| Sbjct 430016 ATCCCTCCCCTCAGTCGGAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCA 430075 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| || |||| |||| ||||||||||||||||| | | ||| || || || Sbjct 430076 GAAAGTGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATAAGACGCTGCTGGTCTGGG 430135 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| || || |||||| || ||||| ||||| ||||| | ||| Sbjct 430136 GGAATTCCTTCTTTGTCCTGGATTTTAGCCTTCACATTTTCAATAGAGTCTGATGGTTCA 430195 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || |||||||| || || | ||||| | ||| || ||||| Sbjct 430196 ACCTCAAGGGTGATGGTTTTCCCTGTGAGGGTTTTTACAAAGATTTGCAT 430245 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || || || || || | ||| | ||| | || | ||| || ||| || || ||| Sbjct 430244 ATCCCTCCCCTCAGTCGGAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCA 430303 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| || |||| |||| || |||||||||||||| | | ||| || || || Sbjct 430304 GAAAGTGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCTGGG 430363 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| || || |||||| |||||||| ||||| ||||| | ||| Sbjct 430364 GGAATTCCTTCTTTGTCCTGGATTTTAGCCTTTACATTTTCAATAGAGTCTGATGGTTCA 430423 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || ||||| || || | ||||| | ||| |||||||| Sbjct 430424 ACCTCAAGGGTGATAGTTTTTCCTGTGAGGGTTTTTACAAAGATCTGCAT 430473 Score = 116 bits (128), Expect = 7e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || || || || || | ||| | ||| | || | ||| || ||| || || ||||| Sbjct 429107 CCTCCCCTCAGTCGGAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAG 429166 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||| || |||| |||| ||||||||||||||||| | | ||| || || || || Sbjct 429167 AGTGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATAAGACGCTGCTGGTCTGGGGGA 429226 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 ||||||||||| || || |||||| || ||||| ||||| ||||| | ||| || Sbjct 429227 ATTCCTTCTTTGTCCTGGATTTTAGCCTTCACATTTTCAATAGAGTCTGATGGTTCAACC 429286 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || |||||||| || || | ||||| | ||| || ||||| Sbjct 429287 TCAAGGGTGATGGTTTTCCCTGTGAGGGTTTTTACAAAGATTTGCAT 429333 >seq4225 Length=872099 Score = 104 bits (114), Expect = 5e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || |||| ||||| || || ||||| | || | ||| || ||| || || || || Sbjct 364463 CCTCCTCGGAGACGCAACACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGAC 364522 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 ||||| ||| |||| |||| ||||||||||||||||| | | ||| || || || || Sbjct 364523 AATGTACGTCCATCTTCCAGCTGTTTACCAGCAAAGATGAGACGCTGCTGGTCTGGGGGA 364582 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||||| || || || || || ||| ||||| || ||||| | || || Sbjct 364583 ATCCCTTCCTTGTCCTGGATCTTGGCTTTGACATTCTCAATGCTGTCTGATGGCTCAACC 364642 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||| ||||| || || || || | ||| |||||||| Sbjct 364643 TCCAGTGTGATGGTCTTACCGGTCAAAGTCTTCACAAAGATCTGCAT 364689 Score = 100 bits (110), Expect = 6e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| |||| ||||| || || ||||| | || | ||| || ||| || || || Sbjct 368108 ATACCTCCTCGGAGACGCAACACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCG 368167 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||| ||| |||| |||| |||||||| |||||||| | | ||| || || || Sbjct 368168 GACAATGTACGTCCATCTTCCAGCTGTTTACCGGCAAAGATGAGACGCTGCTGGTCTGGG 368227 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || || || ||| ||||| || || || | || Sbjct 368228 GGAATCCCTTCCTTGTCCTGGATCTTGGCTTTGACATTCTCAATGCTGTCCGATGGCTCC 368287 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | || |||||||||||||| || || || | ||| || ||||| Sbjct 368288 ACCTCCAATGTGATGGTTTTACCAGTCAAAGTCTTGACAAAGATTTGCAT 368337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983437380918300