Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq48397 104 4e-17 seq5158 87.8 3e-12 >seq48397 Length=377 Score = 104 bits (114), Expect = 4e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| | || ||||| || || || |||| || || | || Sbjct 347 TGCAAATTTTCGTCAAAACCCTTACTGGAAAGACTATAACCCTTGAGGTTGAGTCTTCCG 288 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | | |||| ||||| || || || || ||| || ||||| |||||||| || |||| Sbjct 287 ACAGTATTGTCAATGTTAAGAACAAGATTCAAGAAAAGGAAGGTATTCCACCAGACCAAC 228 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | ||||| || |||||||||||||| ||| | ||||| | | || || || | Sbjct 227 AACGTTTAATTTTCGCCGGTAAACAATTAGAAGATGACAGAACCCTTTCTGACTACAACA 168 Query 146212 TACAAAAAGAATCGACT 146228 | ||||| ||||| ||| Sbjct 167 TTCAAAAGGAATCTACT 151 >seq5158 Length=501596 Score = 87.8 bits (96), Expect = 3e-12 Identities = 157/227 (69%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||| || || ||||||| | ||||||||||| || || |||| || ||| ||| | Sbjct 430472 TGCAGATCTTTGTAAAAACCCTCACAGGAAAAACTATCACCCTTGAGGTTGAACCATCA- 430414 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || ||||| |||||||||| |||||| || |||||||| ||||| || || || Sbjct 430413 GACTCTATTGAAAATGTAAAGGCTAAAATCCAGGACAAAGAAGGAATTCCCCCAGACCAG 430354 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || | || || ||||| ||||| || | || ||| | || | | || || || Sbjct 430353 CAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACACTTTCTGACTACAAC 430294 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 || || || || || || ||||| | ||| | ||| | || ||||| Sbjct 430293 ATCCAGAAGGAGTCCACACTCCATCTTGTACTCCGACTGAGGGGAGG 430247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785354113221360