Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq48117 143 5e-29 seq53685 141 2e-28 seq4225 131 3e-25 seq48397 122 2e-22 seq5158 122 2e-22 >seq48117 Length=374 Score = 143 bits (158), Expect = 5e-29 Identities = 175/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||| | || || || ||||| || || || || || |||| Sbjct 120 TACCACCACGAAGACGGAGAACAAGATGGAGGGTGGATTCCTTTTGGATGTTGTAGTCAG 179 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | | ||||||| ||| || ||||| || |||| | |||||||||||| | Sbjct 180 AAAGAGTACGGTCATCTTCTAATTGCTTACCAGCGAAAATTAAACGTTGTTGATCTGGTG 239 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||| |||||| || ||||| |||| |||| || ||| | Sbjct 240 GAATACCTTCCTTTTCTTGGATCTTTTGCTTAACATTAACAATGCTATCGGAAGATTCAA 299 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATATTT 82820 | || | ||||| ||||| || || | ||||||||||| ||||||||||| ||| || Sbjct 300 CCTCAAGGGTTATAGTCTTTCCGGTAAGGGTCTTTACAAAAATCTGCATTATGATAATT 358 >seq53685 Length=437 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 82593 AAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTA 82652 ||||| || || | || | ||||||||| || || || || |||||||| || | | | Sbjct 207 AAACGAAGGACAAGATGTAAAGTAGATTCCTTTTGGATGTTGTAATCAGAAAGGGTACGA 266 Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||||| ||| || ||||| || || || | |||||| ||||| || || |||||| Sbjct 267 CCATCTTCTAATTGCTTACCAGCGAAAATAAGACGTTGTTGGTCTGGTGGGATACCTTCC 326 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 ||||||||||| || ||||| ||||||||||| || || | ||| || || | || Sbjct 327 TTATCTTGAATTTTAGCTTTGACATTTTCAATAGTGTCGGAGGATTCAACCTCAAGGGTA 386 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| || || | || || ||||| || ||||| Sbjct 387 ATGGTCTTACCCGTAAGGGTTTTGACAAAGATTTGCAT 424 >seq4225 Length=872099 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||| | ||||| || || || || || || || ||||| || || || || || Sbjct 364463 CCTCCTCGGAGACGCAACACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGAC 364522 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | || ||||| || ||||| ||||||||||| || | || || ||||| || Sbjct 364523 AATGTACGTCCATCTTCCAGCTGTTTACCAGCAAAGATGAGACGCTGCTGGTCTGGGGGA 364582 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || ||||| ||||| ||||| ||||| | || || || || Sbjct 364583 ATCCCTTCCTTGTCCTGGATCTTGGCTTTGACATTCTCAATGCTGTCTGATGGCTCAACC 364642 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || ||||| || ||||| ||||| ||||| |||||||| Sbjct 364643 TCCAGTGTGATGGTCTTACCGGTCAAAGTCTTCACAAAGATCTGCAT 364689 >seq48397 Length=377 Score = 122 bits (134), Expect = 2e-22 Identities = 171/239 (72%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||| | ||| ||||||||||| || || || || || |||| Sbjct 120 TACCACCACGAAGACGGAGAACAAGGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAG 179 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || |||| | ||||||| |||||| || || || |||| | |||||| ||||| | Sbjct 180 AAAGGGTTCTGTCATCTTCTAATTGTTTACCGGCGAAAATTAAACGTTGTTGGTCTGGTG 239 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||||||||| || ||||| |||| | || || || | Sbjct 240 GAATACCTTCCTTTTCTTGAATCTTGTTCTTAACATTGACAATACTGTCGGAAGACTCAA 299 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCA--TTATTATAT 82818 | || | ||||| ||||| || || | || || || || || |||| ||||| ||| Sbjct 300 CCTCAAGGGTTATAGTCTTTCCAGTAAGGGTTTTGACGAAAATTTGCATCTTATTTTAT 358 >seq5158 Length=501596 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| |||| || || || | || || || || || ||||| || || || ||||| Sbjct 430247 CCTCCCCTCAGTCGGAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAA 430306 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || || ||||||||||| || | || || ||||| || Sbjct 430307 AGTGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCTGGGGGA 430366 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||| || || || || || || |||||||||||||| | || ||||| || Sbjct 430367 ATTCCTTCTTTGTCCTGGATTTTAGCCTTTACATTTTCAATAGAGTCTGATGGTTCAACC 430426 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || || || ||||| | || |||||||| |||||||| Sbjct 430427 TCAAGGGTGATAGTTTTTCCTGTGAGGGTTTTTACAAAGATCTGCAT 430473 Score = 116 bits (128), Expect = 7e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| |||| || || || | || || || || || ||||| || || || ||||| Sbjct 429107 CCTCCCCTCAGTCGGAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAG 429166 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || ||||| ||||||||||| || | || || ||||| || Sbjct 429167 AGTGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATAAGACGCTGCTGGTCTGGGGGA 429226 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||| || || || || || || || ||||||||||| | || ||||| || Sbjct 429227 ATTCCTTCTTTGTCCTGGATTTTAGCCTTCACATTTTCAATAGAGTCTGATGGTTCAACC 429286 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || || || ||||| | || |||||||| || ||||| Sbjct 429287 TCAAGGGTGATGGTTTTCCCTGTGAGGGTTTTTACAAAGATTTGCAT 429333 Score = 116 bits (128), Expect = 7e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| |||| || || || | || || || || || ||||| || || || ||||| Sbjct 429335 CCTCCCCTCAGTCGGAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAA 429394 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || ||||| ||||||||||| || | || || ||||| || Sbjct 429395 AGTGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATAAGACGCTGCTGGTCTGGGGGA 429454 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||| || || || || || || || ||||||||||| | || ||||| || Sbjct 429455 ATTCCTTCTTTGTCCTGGATTTTAGCCTTCACATTTTCAATAGAGTCTGATGGTTCAACC 429514 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || || || ||||| | || |||||||| || ||||| Sbjct 429515 TCAAGGGTGATGGTTTTCCCTGTGAGGGTTTTTACAAAGATTTGCAT 429561 Score = 116 bits (128), Expect = 7e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| |||| || || || | || || || || || ||||| || || || ||||| Sbjct 429563 CCTCCCCTCAGTCGGAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAA 429622 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || ||||| ||||||||||| || | || || ||||| || Sbjct 429623 AGTGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATAAGACGCTGCTGGTCTGGGGGA 429682 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||| || || || || || || || ||||||||||| | || ||||| || Sbjct 429683 ATTCCTTCTTTGTCCTGGATTTTAGCCTTCACATTTTCAATAGAGTCTGATGGTTCAACC 429742 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || || || ||||| | || |||||||| || ||||| Sbjct 429743 TCAAGGGTGATGGTTTTCCCTGTGAGGGTTTTTACAAAGATTTGCAT 429789 Score = 116 bits (128), Expect = 7e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| |||| || || || | || || || || || ||||| || || || ||||| Sbjct 429791 CCTCCCCTCAGTCGGAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAA 429850 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || ||||| ||||||||||| || | || || ||||| || Sbjct 429851 AGTGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATAAGACGCTGCTGGTCTGGGGGA 429910 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||| || || || || || || || ||||||||||| | || ||||| || Sbjct 429911 ATTCCTTCTTTGTCCTGGATTTTAGCCTTCACATTTTCAATAGAGTCTGATGGTTCAACC 429970 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || || || ||||| | || |||||||| || ||||| Sbjct 429971 TCAAGGGTGATGGTTTTCCCTGTGAGGGTTTTTACAAAGATTTGCAT 430017 Score = 116 bits (128), Expect = 7e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| |||| || || || | || || || || || ||||| || || || ||||| Sbjct 430019 CCTCCCCTCAGTCGGAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAA 430078 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || ||||| ||||||||||| || | || || ||||| || Sbjct 430079 AGTGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATAAGACGCTGCTGGTCTGGGGGA 430138 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||| || || || || || || || ||||||||||| | || ||||| || Sbjct 430139 ATTCCTTCTTTGTCCTGGATTTTAGCCTTCACATTTTCAATAGAGTCTGATGGTTCAACC 430198 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || || || ||||| | || |||||||| || ||||| Sbjct 430199 TCAAGGGTGATGGTTTTCCCTGTGAGGGTTTTTACAAAGATTTGCAT 430245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980787390381062