Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq5158 111 4e-19 seq4225 95.1 3e-14 seq48397 93.3 1e-13 >seq5158 Length=501596 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| |||||||||||||| ||||| | || || ||| || ||| Sbjct 430470 CAGATCTTTGTAAAAACCCTCACAGGAAAAACTATCACCCTTGAGGTTGAACCATCAGAC 430411 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | ||| |||||| || || || || |||||||||||| || ||| || Sbjct 430410 TCTATTGAAAATGTAAAGGCTAAAATCCAGGACAAAGAAGGAATTCCCCCAGACCAGCAG 430351 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | |||||||| || || |||||| |||||||||| | || | | || |||||| || Sbjct 430350 CGTCTTATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACACTTTCTGACTACAACATC 430291 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || || ||||| Sbjct 430290 CAGAAGGAGTCCACACTCCATCTTGT 430265 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| |||||||| ||||| ||||| | || || ||| || ||| | | ||| Sbjct 429318 AAAACCCTCACAGGGAAAACCATCACCCTTGAGGTTGAACCATCAGACTCTATTGAAAAT 429259 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || || || || |||||||||||| || ||| || | |||||||| Sbjct 429258 GTGAAGGCTAAAATCCAGGACAAAGAAGGAATTCCCCCAGACCAGCAGCGTCTTATCTTT 429199 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || ||| |||||||||| | || | | || |||||| ||||||| ||||| Sbjct 429198 GCTGGTAAACAGCTGGAAGATGGCCGCACACTCTCTGACTACAACATCCAGAAGGAGTCC 429139 Query 206365 ACTCTTCACCTTGT 206378 || || || ||||| Sbjct 429138 ACACTCCATCTTGT 429125 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| |||||||| ||||| ||||| | || || ||| || ||| | | ||| Sbjct 429546 AAAACCCTCACAGGGAAAACCATCACCCTTGAGGTTGAACCATCAGACTCTATTGAAAAT 429487 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || || || || |||||||||||| || ||| || | |||||||| Sbjct 429486 GTGAAGGCTAAAATCCAGGACAAAGAAGGAATTCCCCCAGACCAGCAGCGTCTTATCTTT 429427 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || ||| |||||||||| | || | | || |||||| ||||||| ||||| Sbjct 429426 GCTGGTAAACAGCTGGAAGATGGCCGCACACTTTCTGACTACAACATCCAGAAGGAGTCC 429367 Query 206365 ACTCTTCACCTTGT 206378 || || || ||||| Sbjct 429366 ACACTCCATCTTGT 429353 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| |||||||| ||||| ||||| | || || ||| || ||| | | ||| Sbjct 429774 AAAACCCTCACAGGGAAAACCATCACCCTTGAGGTTGAACCATCAGACTCTATTGAAAAT 429715 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || || || || |||||||||||| || ||| || | |||||||| Sbjct 429714 GTGAAGGCTAAAATCCAGGACAAAGAAGGAATTCCCCCAGACCAGCAGCGTCTTATCTTT 429655 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || ||| |||||||||| | || | | || |||||| ||||||| ||||| Sbjct 429654 GCTGGTAAACAGCTGGAAGATGGCCGCACACTTTCTGACTACAACATCCAGAAGGAGTCC 429595 Query 206365 ACTCTTCACCTTGT 206378 || || || ||||| Sbjct 429594 ACACTCCATCTTGT 429581 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| |||||||| ||||| ||||| | || || ||| || ||| | | ||| Sbjct 430002 AAAACCCTCACAGGGAAAACCATCACCCTTGAGGTTGAACCATCAGACTCTATTGAAAAT 429943 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || || || || |||||||||||| || ||| || | |||||||| Sbjct 429942 GTGAAGGCTAAAATCCAGGACAAAGAAGGAATTCCCCCAGACCAGCAGCGTCTTATCTTT 429883 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || ||| |||||||||| | || | | || |||||| ||||||| ||||| Sbjct 429882 GCTGGTAAACAGCTGGAAGATGGCCGCACACTTTCTGACTACAACATCCAGAAGGAGTCC 429823 Query 206365 ACTCTTCACCTTGT 206378 || || || ||||| Sbjct 429822 ACACTCCATCTTGT 429809 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| |||||||| ||||| ||||| | || || ||| || ||| | | ||| Sbjct 430230 AAAACCCTCACAGGGAAAACCATCACCCTTGAGGTTGAACCATCAGACTCTATTGAAAAT 430171 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || || || || |||||||||||| || ||| || | |||||||| Sbjct 430170 GTGAAGGCTAAAATCCAGGACAAAGAAGGAATTCCCCCAGACCAGCAGCGTCTTATCTTT 430111 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || ||| |||||||||| | || | | || |||||| ||||||| ||||| Sbjct 430110 GCTGGTAAACAGCTGGAAGATGGCCGCACACTTTCTGACTACAACATCCAGAAGGAGTCC 430051 Query 206365 ACTCTTCACCTTGT 206378 || || || ||||| Sbjct 430050 ACACTCCATCTTGT 430037 >seq4225 Length=872099 Score = 95.1 bits (104), Expect = 3e-14 Identities = 158/222 (71%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || | || || ||||| ||||| ||||| ||||| || ||| Sbjct 368334 CAAATCTTTGTCAAGACTTTGACTGGTAAAACCATCACATTGGAGGTGGAGCCATCGGAC 368275 Query 206233 A-CAGTC-GAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCT 206289 | || | |||| || ||||| || ||| || || || ||||| ||| || ||| Sbjct 368274 AGCATTGAGAAT--GTCAAAGCCAA-GATCCAGGACAAGGAAGGGATTCCCCCAGACCAG 368218 Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 || | || ||||| ||||| || ||| ||||||||||| | || ||| |||| |||||| Sbjct 368217 CAGCGTCTCATCTTTGCCGGTAAACAGCTGGAAGATGGACGTACATTGTCCGACTACAAC 368158 Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||||| ||||| || || || | || ||| | || ||| Sbjct 368157 ATCCAGAAGGAGTCCACACTCCATTTGGTGTTGCGTCTCCGA 368116 >seq48397 Length=377 Score = 93.3 bits (102), Expect = 1e-13 Identities = 147/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| || || ||||| || || || | || || || ||| |||| | | || Sbjct 334 CAAAACCCTTACTGGAAAGACTATAACCCTTGAGGTTGAGTCTTCCGACAGTATTG--TC 277 Query 206244 A--GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATC 206301 | || ||| | |||||||||||||| ||||| ||| || ||| ||| | | || Sbjct 276 AATGTTAAGAACAAGATTCAAGAAAAGGAAGGTATTCCACCAGACCAACAACGTTTAATT 217 Query 206302 TTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAG 206361 |||||||| || || || ||||||| || || | | || |||||| | || || || Sbjct 216 TTCGCCGGTAAACAATTAGAAGATGACAGAACCCTTTCTGACTACAACATTCAAAAGGAA 157 Query 206362 TCTACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||||||||||||| | | ||||| Sbjct 156 TCTACTCTTCACCTTGTTCTCCGTCTTCG 128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180569186034018