Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq3918 147 3e-30 seq3345 96.9 5e-15 >seq3918 Length=790838 Score = 147 bits (162), Expect = 3e-30 Identities = 159/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 39999 CCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAA 40058 |||| || ||||| || ||||||||||| || ||||| ||||| | |||||| || | Sbjct 707525 CCAAGTTCTCATTGACAATTCCATCACTGGCAGCAAAGAATGCAAGTACATGCGAGATGA 707584 Query 40059 AATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTT 40118 ||| |||||||||| ||| || | ||||| || || ||||| || | |||||||| Sbjct 707585 AATGTTTTTCATCGTCCTTCAGGTTCTCCCAGTGGTTCATGTCTTTGGACAGATCTACTT 707644 Query 40119 CTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATT 40178 | ||||| ||||| || || || ||||||||||||||||| ||||| || || | || | Sbjct 707645 CCTCAGCAGTCCAGAAGGAGGCTTCTGCCTTTTTGTACATCTTCCAAATGTCGTGGTACT 707704 Query 40179 GTATTGGAAAAATAACAAATCTATTTGGATT 40209 || ||||| | |||||| | | |||||| Sbjct 707705 TGATGGGAAATACAACAAAGCGACGTGGATT 707735 Score = 114 bits (126), Expect = 2e-20 Identities = 162/225 (72%), Gaps = 7/225 (3%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||| || || ||||| ||||| ||||| || |||||||| | || | ||| | Sbjct 705759 CCTCATCCCTGCTTATTAACTCGTTGCTGAATGTAAGACCAGGCATAATTCCCCTCTTCT 705818 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| |||||||||||||| ||||| ||||| || |||||||| || || || | Sbjct 705819 TCAGCCAGAATATGGCAGCAAAGCTACCAGAGAAGAAAATCCCTTCTACAGCAGCGAAAG 705878 Query 39759 CAACAAGTCTCTCTCCGTAACTT--GTATCATTATGT---ATCCACTTCTGTGCCCAATC 39813 | | || ||||||| | || | | ||| | | ||||| || |||||||| Sbjct 705879 CTATAA--CTCTCTCAGCAAAGTCGGAATCTTGGTCCCCAATCCAGTTGATGGCCCAATC 705936 Query 39814 AGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 39858 ||| ||||| || ||||| ||||| || || || ||||| || || Sbjct 705937 AGCCTTCTTTTTGACACATGGCATGGTCTCAATGGCATTGAACAG 705981 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372 |||||||||||| || |||||||| ||||| |||||||| || ||||| || || ||||| Sbjct 704803 CATAACTCCCATCTTCTGGTATTCTCCAACTCGTTTCTCAAAGAAATTGGTCTTTCCTTC 704862 Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATT 39405 |||||| || | ||||| || ||||| || || Sbjct 704863 CAATGAGATCTGCTCCATAAAGTCAAATGGGTT 704895 >seq3345 Length=2905891 Score = 96.9 bits (106), Expect = 5e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 69562 GGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATC 69621 |||||||| | | ||| | |||| | || |||| ||||||||||| ||||| ||| Sbjct 2713866 GGACACATGAGCGTCCAGTCTTCATTGTTCTCTACTCTCTTCATAAATAGGTCGGGGATC 2713925 Query 69622 CAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGA 69681 || || || ||| || || | | ||||| || || ||||| |||||||||||| Sbjct 2713926 CACAGTGCGTAAAATAGGTCACGAGCCCTATTCTCCTCCTTTCCCGTATTTTTTTTACAG 2713985 Query 69682 TCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGT 69741 || | ||| || | |||||| ||||||||||||| | || || || | | |||| ||| Sbjct 2713986 TCCAAAAAGTCGAACATATCACAATGCCATGGTTCCAAGTAAATGGCAAAGGCTCCTGGT 2714045 Query 69742 C 69742 | Sbjct 2714046 C 2714046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686199068655120