Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq3918 93.3 3e-14 >seq3918 Length=790838 Score = 93.3 bits (102), Expect = 3e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 43914 AAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATA 43973 ||||||||||| | |||||||| ||||||| || || || ||||| || || || || | Sbjct 706341 AAGAAGTTCAAGCAACAGAAGCAAGATGTTTCTACGGATTCCAAATAGCTATGGAGAACA 706282 Query 43974 TTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 |||| || |||||||||||| | || || || || |||||||| || Sbjct 706281 TTCACTCTGAAATGTACAGTTTACTTATCGACACATACATCAAGGA 706236 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/225 (70%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 43677 TGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGC 43736 |||| | || ||||| | | ||||| || ||||| || | || || ||||| ||| Sbjct 707746 TGCTGAAGGACAATCCACGTCGCTTTGTTGTATTTCCCATCAAGTACCACGACATTTGGA 707687 Query 43737 AAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAG 43796 | ||||||||||| ||| | || || || ||||| || || ||||| ||| || | |||| Sbjct 707686 AGATGTACAAAAAGGCAGAAGCCTCCTTCTGGACTGCTGAGGAAGTAGATCTGTCCAAAG 707627 Query 43797 ACTT--AGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTT 43854 || | | ||| | ||| | | || | | ||||||||||| || || || | Sbjct 707626 ACATGAACCAC-TGGGAGAACCTGAAGGAC-GATGAAAAACATTTCATCTCGCATGTACT 707569 Query 43855 GGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGT 43899 || || |||||||| || || || || |||||||| || ||||| Sbjct 707568 TGCATTCTTTGCTGCCAGTGATGGAATTGTCAATGAGAACTTGGT 707524 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 ||||||| ||||| |||||||| | || || |||||||| || || || || ||||| | Sbjct 704897 AAAACCCATTTGACTTTATGGAGCAGATCTCATTGGAAGGAAAGACCAATTTCTTTGAGA 704838 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATGA 44588 |||| ||||||||||| ||| ||||| || |||| Sbjct 704837 AACGAGTTGGAGAATACCAGAAGATGGGAGTTATGA 704802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397055605061290