Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq53685 161 9e-35 seq48397 132 4e-26 seq5158 122 8e-23 seq5537 84.2 2e-11 >seq53685 Length=437 Score = 161 bits (178), Expect = 9e-35 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| || || || ||| | ||||| ||||| || ||| | ||| Sbjct 424 ATGCAAATCTTTGTCAAAACCCTTACGGGTAAGACCATTACCCTTGAGGTTGAATCCTCC 365 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| ||||||||||| || ||||| || ||||| || ||| Sbjct 364 GACACTATTGAAAATGTCAAAGCTAAAATTCAAGATAAGGAAGGTATCCCACCAGACCAA 305 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||| || || ||||| ||||| || ||| |||| ||||||||| Sbjct 304 CAACGTCTTATTTTCGCTGGTAAGCAATTAGAAGATGGTCGTACCCTTTCTGATTACAAC 245 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || |||||||| || || |||||| | || | ||||| || ||||| Sbjct 244 ATCCAAAAGGAATCTACTTTACATCTTGTCCTTCGTTTACGTGGTGG 198 >seq48397 Length=377 Score = 132 bits (146), Expect = 4e-26 Identities = 170/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| || || || ||| |||| || ||||| || || | ||| Sbjct 348 ATGCAAATTTTCGTCAAAACCCTTACTGGAAAGACTATAACCCTTGAGGTTGAGTCTTCC 289 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| | || || | || |||||||| || ||||| || ||||| || ||| Sbjct 288 GACAGTATTGTCAATGTTAAGAACAAGATTCAAGAAAAGGAAGGTATTCCACCAGACCAA 229 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGA---CAGTTCGACCGTTTCCGATTAC 27164 || |||||||| | |||||| |||||||| ||||| ||| ||| |||| || ||| Sbjct 228 CAACGTTTAATTTTCGCCGGTAAACAATTAGAAGATGACAGA---ACCCTTTCTGACTAC 172 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||||| || || | || | ||| | ||| | || ||||| || Sbjct 171 AACATTCAAAAGGAATCTACTCTTCACCTTGTTCTCCGTCTTCGTGGTGGTAT 119 >seq5158 Length=501596 Score = 122 bits (134), Expect = 8e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| ||||||||||| || || || || |||| || ||||| || ||||| | Sbjct 430475 CCATGCAGATCTTTGTAAAAACCCTCACAGGAAAAACTATCACCCTTGAGGTTGAACCAT 430416 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | ||||| ||||| | || || ||||| || ||||||||||| || || || || | Sbjct 430415 CAGACTCTATTGAAAATGTAAAGGCTAAAATCCAGGACAAAGAAGGAATTCCCCCAGACC 430356 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | |||||| | || | || || || || ||||||| | || |||| || |||| Sbjct 430355 AGCAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACACTTTCTGACTACA 430296 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| || |||||||| || | ||| | || | || || |||| || || Sbjct 430295 ACATCCAGAAGGAGTCCACACTCCATCTTGTACTCCGACTGAGGGGAGGGAT 430244 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||||||||| || || || || | || || ||||| || ||||| || Sbjct 429561 ATGCAAATCTTTGTAAAAACCCTCACAGGGAAAACCATCACCCTTGAGGTTGAACCATCA 429502 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| ||||| | || || ||||| || ||||||||||| || || || || || Sbjct 429501 GACTCTATTGAAAATGTGAAGGCTAAAATCCAGGACAAAGAAGGAATTCCCCCAGACCAG 429442 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || ||||| ||||||| | || |||| || |||||| Sbjct 429441 CAGCGTCTTATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACACTTTCTGACTACAAC 429382 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | ||| | || | || || |||| || || Sbjct 429381 ATCCAGAAGGAGTCCACACTCCATCTTGTACTCCGACTGAGGGGAGGGAT 429332 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||||||||| || || || || | || || ||||| || ||||| || Sbjct 429789 ATGCAAATCTTTGTAAAAACCCTCACAGGGAAAACCATCACCCTTGAGGTTGAACCATCA 429730 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| ||||| | || || ||||| || ||||||||||| || || || || || Sbjct 429729 GACTCTATTGAAAATGTGAAGGCTAAAATCCAGGACAAAGAAGGAATTCCCCCAGACCAG 429670 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || ||||| ||||||| | || |||| || |||||| Sbjct 429669 CAGCGTCTTATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACACTTTCTGACTACAAC 429610 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | ||| | || | || || |||| || || Sbjct 429609 ATCCAGAAGGAGTCCACACTCCATCTTGTACTCCGACTGAGGGGAGGGAT 429560 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||||||||| || || || || | || || ||||| || ||||| || Sbjct 430017 ATGCAAATCTTTGTAAAAACCCTCACAGGGAAAACCATCACCCTTGAGGTTGAACCATCA 429958 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| ||||| | || || ||||| || ||||||||||| || || || || || Sbjct 429957 GACTCTATTGAAAATGTGAAGGCTAAAATCCAGGACAAAGAAGGAATTCCCCCAGACCAG 429898 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || ||||| ||||||| | || |||| || |||||| Sbjct 429897 CAGCGTCTTATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACACTTTCTGACTACAAC 429838 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | ||| | || | || || |||| || || Sbjct 429837 ATCCAGAAGGAGTCCACACTCCATCTTGTACTCCGACTGAGGGGAGGGAT 429788 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||||||||| || || || || | || || ||||| || ||||| || Sbjct 430245 ATGCAAATCTTTGTAAAAACCCTCACAGGGAAAACCATCACCCTTGAGGTTGAACCATCA 430186 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| ||||| | || || ||||| || ||||||||||| || || || || || Sbjct 430185 GACTCTATTGAAAATGTGAAGGCTAAAATCCAGGACAAAGAAGGAATTCCCCCAGACCAG 430126 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || ||||| ||||||| | || |||| || |||||| Sbjct 430125 CAGCGTCTTATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACACTTTCTGACTACAAC 430066 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | ||| | || | || || |||| || || Sbjct 430065 ATCCAGAAGGAGTCCACACTCCATCTTGTACTCCGACTGAGGGGAGGGAT 430016 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||||||||| || || || || | || || ||||| || ||||| || Sbjct 429333 ATGCAAATCTTTGTAAAAACCCTCACAGGGAAAACCATCACCCTTGAGGTTGAACCATCA 429274 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| ||||| | || || ||||| || ||||||||||| || || || || || Sbjct 429273 GACTCTATTGAAAATGTGAAGGCTAAAATCCAGGACAAAGAAGGAATTCCCCCAGACCAG 429214 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || ||||| ||||||| | || | || || |||||| Sbjct 429213 CAGCGTCTTATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACACTCTCTGACTACAAC 429154 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || |||||||| || Sbjct 429153 ATCCAGAAGGAGTCCAC 429137 >seq5537 Length=2264733 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 135647 GTAGGTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTG 135706 |||||||||||||||||||| || || | || || |||||||||||||| | |||| Sbjct 87964 GTAGGTTGTATGTGGTCTATCTGTGGCATTCATGACCAAGGATGGAAGGAAAGGGAAGTA 87905 Query 135707 TTTGGCAAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGTA 135760 || ||||| || || || ||||| || | || |||| ||||| ||| | ||| Sbjct 87904 TTCGGCAAAATCCGTTACATGAATTACGCTGGCTGTAAGAGAAAGTTTGACGTA 87851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434469031436160