Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq53685 89.7 4e-13 seq4225 87.8 1e-12 seq48397 82.4 5e-11 >seq53685 Length=437 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| ||||| ||||| || || ||||| |||| || ||| | || Sbjct 424 ATGCAAATCTTTGTCAAAACCCTTACGGGTAAGACCATTACCCTTGAGGTTGAATCCTCC 365 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | | || |||||| ||||| || || |||||| | || || || Sbjct 364 GACACTATTGAAAATGTCAAAGCTAAAATTCAAGATAAGGAAGGTATCCCACCAGACCAA 305 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| | ||||| || || || ||||| || || | || | | | || ||||||||| Sbjct 304 CAACGTCTTATTTTCGCTGGTAAGCAATTAGAAGATGGTCGTACCCTTTCTGATTACAAC 245 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || ||||| ||| | || | ||||| ||||| || Sbjct 244 ATCCAAAAGGAATCTACTTTACATCTTGTCCTTCGTTTACGTGGTGG 198 >seq4225 Length=872099 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || ||| | ||||| ||| || ||| | || || || | Sbjct 368337 ATGCAAATCTTTGTCAAGACTTTGACTGGTAAAACCATCACATTGGAGGTGGAGCCATCG 368278 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| |||||| || || ||||| ||||| |||| || | Sbjct 368277 GACAGCATTGAGAAT--GTCAAAGCCAAGATCCAGGACAAGGAAGGGATTCCCCCAGACC 368220 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || |||||||| ||||| |||| || | ||| | |||||||| |||| Sbjct 368219 AGCAGCGTCTCATCTTTGCCGGTAAACAGCTGGAAGATGGACGTACATTGTCCGACTACA 368160 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| ||| | |||||||| |||||| | || || || Sbjct 368159 ACATCCAGAAGGAGTCCACACTCCATTTGGTGTTGCGTCTCCGAGGAGG 368111 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| |||| || ||||| || | || |||||||| ||||| |||| Sbjct 364824 GACAAGGAAGGGATTCCCCCAGACCAGCAGCGTCTCATCTTTGCCGGTAAACAGCTGGAA 364765 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||| | |||||||| ||||||||||| || ||| ||| | |||||||| ||| Sbjct 364764 GATGGACGTACATTGTCCGACTACAACATCCAGAAGGAGTCCACACTCCATTTGGTGTTG 364705 Query 28003 CGTTTGCGTGGCGG 28016 ||| | || || || Sbjct 364704 CGTCTCCGAGGAGG 364691 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| |||| || ||||| || | || |||||||| ||||| |||| Sbjct 365052 GACAAGGAAGGGATTCCCCCAGACCAGCAGCGTCTCATCTTTGCCGGTAAACAGCTGGAA 364993 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||| | |||||||| ||||||||||| || ||| ||| | |||||||| ||| Sbjct 364992 GATGGACGTACATTGTCCGACTACAACATCCAGAAGGAGTCCACACTCCATTTGGTGTTG 364933 Query 28003 CGTTTGCGTGGCGG 28016 ||| | || || || Sbjct 364932 CGTCTCCGAGGAGG 364919 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| |||| || ||||| || | || |||||||| ||||| |||| Sbjct 365280 GACAAGGAAGGGATTCCCCCAGACCAGCAGCGTCTCATCTTTGCCGGTAAACAGCTGGAA 365221 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||| | |||||||| ||||||||||| || ||| ||| | |||||||| ||| Sbjct 365220 GATGGACGTACATTGTCCGACTACAACATCCAGAAGGAGTCCACACTCCATTTGGTGTTG 365161 Query 28003 CGTTTGCGTGGCGG 28016 ||| | || || || Sbjct 365160 CGTCTCCGAGGAGG 365147 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| |||| || ||||| || | || |||||||| ||||| |||| Sbjct 365508 GACAAGGAAGGGATTCCCCCAGACCAGCAGCGTCTCATCTTTGCCGGTAAACAGCTGGAA 365449 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||| | |||||||| ||||||||||| || ||| ||| | |||||||| ||| Sbjct 365448 GATGGACGTACATTGTCCGACTACAACATCCAGAAGGAGTCCACACTCCATTTGGTGTTG 365389 Query 28003 CGTTTGCGTGGCGG 28016 ||| | || || || Sbjct 365388 CGTCTCCGAGGAGG 365375 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| |||| || ||||| || | || |||||||| ||||| |||| Sbjct 365736 GACAAGGAAGGGATTCCCCCAGACCAGCAGCGTCTCATCTTTGCCGGTAAACAGCTGGAA 365677 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||| | |||||||| ||||||||||| || ||| ||| | |||||||| ||| Sbjct 365676 GATGGACGTACATTGTCCGACTACAACATCCAGAAGGAGTCCACACTCCATTTGGTGTTG 365617 Query 28003 CGTTTGCGTGGCGG 28016 ||| | || || || Sbjct 365616 CGTCTCCGAGGAGG 365603 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| |||| || ||||| || | || |||||||| ||||| |||| Sbjct 365964 GACAAGGAAGGGATTCCCCCAGACCAGCAGCGTCTCATCTTTGCCGGTAAACAGCTGGAA 365905 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||| | |||||||| ||||||||||| || ||| ||| | |||||||| ||| Sbjct 365904 GATGGACGTACATTGTCCGACTACAACATCCAGAAGGAGTCCACACTCCATTTGGTGTTG 365845 Query 28003 CGTTTGCGTGGCGG 28016 ||| | || || || Sbjct 365844 CGTCTCCGAGGAGG 365831 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| |||| || ||||| || | || |||||||| ||||| |||| Sbjct 366192 GACAAGGAAGGGATTCCCCCAGACCAGCAGCGTCTCATCTTTGCCGGTAAACAGCTGGAA 366133 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||| | |||||||| ||||||||||| || ||| ||| | |||||||| ||| Sbjct 366132 GATGGACGTACATTGTCCGACTACAACATCCAGAAGGAGTCCACACTCCATTTGGTGTTG 366073 Query 28003 CGTTTGCGTGGCGG 28016 ||| | || || || Sbjct 366072 CGTCTCCGAGGAGG 366059 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| |||| || ||||| || | || |||||||| ||||| |||| Sbjct 366420 GACAAGGAAGGGATTCCCCCAGACCAGCAGCGTCTCATCTTTGCCGGTAAACAGCTGGAA 366361 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||| | |||||||| ||||||||||| || ||| ||| | |||||||| ||| Sbjct 366360 GATGGACGTACATTGTCCGACTACAACATCCAGAAGGAGTCCACACTCCATTTGGTGTTG 366301 Query 28003 CGTTTGCGTGGCGG 28016 ||| | || || || Sbjct 366300 CGTCTCCGAGGAGG 366287 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| |||| || ||||| || | || |||||||| ||||| |||| Sbjct 366648 GACAAGGAAGGGATTCCCCCAGACCAGCAGCGTCTCATCTTTGCCGGTAAACAGCTGGAA 366589 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||| | |||||||| ||||||||||| || ||| ||| | |||||||| ||| Sbjct 366588 GATGGACGTACATTGTCCGACTACAACATCCAGAAGGAGTCCACACTCCATTTGGTGTTG 366529 Query 28003 CGTTTGCGTGGCGG 28016 ||| | || || || Sbjct 366528 CGTCTCCGAGGAGG 366515 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| |||| || ||||| || | || |||||||| ||||| |||| Sbjct 366876 GACAAGGAAGGGATTCCCCCAGACCAGCAGCGTCTCATCTTTGCCGGTAAACAGCTGGAA 366817 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||| | |||||||| ||||||||||| || ||| ||| | |||||||| ||| Sbjct 366816 GATGGACGTACATTGTCCGACTACAACATCCAGAAGGAGTCCACACTCCATTTGGTGTTG 366757 Query 28003 CGTTTGCGTGGCGG 28016 ||| | || || || Sbjct 366756 CGTCTCCGAGGAGG 366743 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| |||| || ||||| || | || |||||||| ||||| |||| Sbjct 367104 GACAAGGAAGGGATTCCCCCAGACCAGCAGCGTCTCATCTTTGCCGGTAAACAGCTGGAA 367045 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||| | |||||||| ||||||||||| || ||| ||| | |||||||| ||| Sbjct 367044 GATGGACGTACATTGTCCGACTACAACATCCAGAAGGAGTCCACACTCCATTTGGTGTTG 366985 Query 28003 CGTTTGCGTGGCGG 28016 ||| | || || || Sbjct 366984 CGTCTCCGAGGAGG 366971 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| |||| || ||||| || | || |||||||| ||||| |||| Sbjct 367332 GACAAGGAAGGGATTCCCCCAGACCAGCAGCGTCTCATCTTTGCCGGTAAACAGCTGGAA 367273 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||| | |||||||| ||||||||||| || ||| ||| | |||||||| ||| Sbjct 367272 GATGGACGTACATTGTCCGACTACAACATCCAGAAGGAGTCCACACTCCATTTGGTGTTG 367213 Query 28003 CGTTTGCGTGGCGG 28016 ||| | || || || Sbjct 367212 CGTCTCCGAGGAGG 367199 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| |||| || ||||| || | || |||||||| ||||| |||| Sbjct 367560 GACAAGGAAGGGATTCCCCCAGACCAGCAGCGTCTCATCTTTGCCGGTAAACAGCTGGAA 367501 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||| | |||||||| ||||||||||| || ||| ||| | |||||||| ||| Sbjct 367500 GATGGACGTACATTGTCCGACTACAACATCCAGAAGGAGTCCACACTCCATTTGGTGTTG 367441 Query 28003 CGTTTGCGTGGCGG 28016 ||| | || || || Sbjct 367440 CGTCTCCGAGGAGG 367427 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| |||| || ||||| || | || |||||||| ||||| |||| Sbjct 367788 GACAAGGAAGGGATTCCCCCAGACCAGCAGCGTCTCATCTTTGCCGGTAAACAGCTGGAA 367729 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||| | |||||||| ||||||||||| || ||| ||| | |||||||| ||| Sbjct 367728 GATGGACGTACATTGTCCGACTACAACATCCAGAAGGAGTCCACACTCCATTTGGTGTTG 367669 Query 28003 CGTTTGCGTGGCGG 28016 ||| | || || || Sbjct 367668 CGTCTCCGAGGAGG 367655 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| |||| || ||||| || | || |||||||| ||||| |||| Sbjct 368016 GACAAGGAAGGGATTCCCCCAGACCAGCAGCGTCTCATCTTTGCCGGTAAACAGCTGGAA 367957 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||| | |||||||| ||||||||||| || ||| ||| | |||||||| ||| Sbjct 367956 GATGGACGTACATTGTCCGACTACAACATCCAGAAGGAGTCCACACTCCATTTGGTGTTG 367897 Query 28003 CGTTTGCGTGGCGG 28016 ||| | || || || Sbjct 367896 CGTCTCCGAGGAGG 367883 >seq48397 Length=377 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/233 (68%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 27786 TAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAG 27845 ||| ||||||||||| || ||||| |||||||| || ||| || |||| || || Sbjct 352 TAAGATGCAAATTTTCGTCAAAACCCTTACTGGAAAGACTATAACCCTTGAGGTTGAGTC 293 Query 27846 CACCGAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 ||||| || |||| || || | || || || || |||||| |||| Sbjct 292 TTCCGACAGTATTGTCAAT--GTTAAGAACAAGATTCAAGAAAAGGAAGGTATTCCACCA 235 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || || ||||| |||||||| ||||| |||||||| || || || | | | | || || Sbjct 234 GACCAACAACGTTTAATTTTCGCCGGTAAACAATTAGAAGATGACAGAACCCTTTCTGAC 175 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| ||||| || ||| | || | ||| | ||| | ||||| || Sbjct 174 TACAACATTCAAAAGGAATCTACTCTTCACCTTGTTCTCCGTCTTCGTGGTGG 122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355503906219966