Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq5158 125 5e-24 seq53685 113 3e-20 seq48117 113 3e-20 >seq5158 Length=501596 Score = 125 bits (138), Expect = 5e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||||||||| |||||||| ||||| || || ||||| | | Sbjct 430473 ATGCAGATCTTTGTAAAAACCCTCACAGGAAAAACTATCACCCTTGAGGTTGAACCATCA 430414 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| || |||||| |||| ||||| ||||||||||| | || ||||| || Sbjct 430413 GACTCTATTGAAAATGTAAAGGCTAAAATCCAGGACAAAGAAGGAATTCCCCCAGACCAG 430354 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| || || || |||||||| | ||||| | || |||||| Sbjct 430353 CAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACACTTTCTGACTACAAC 430294 Query 23791 ATACAAAAAGAGTCCACATTACAT 23814 || || || ||||||||| | ||| Sbjct 430293 ATCCAGAAGGAGTCCACACTCCAT 430270 Score = 116 bits (128), Expect = 2e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||||||||| || ||||| ||||| || || ||||| | | Sbjct 429333 ATGCAAATCTTTGTAAAAACCCTCACAGGGAAAACCATCACCCTTGAGGTTGAACCATCA 429274 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| || |||||| | || ||||| ||||||||||| | || ||||| || Sbjct 429273 GACTCTATTGAAAATGTGAAGGCTAAAATCCAGGACAAAGAAGGAATTCCCCCAGACCAG 429214 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| || ||||| |||||||| | ||||| | || |||||| Sbjct 429213 CAGCGTCTTATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACACTCTCTGACTACAAC 429154 Query 23791 ATACAAAAAGAGTCCACATTACAT 23814 || || || ||||||||| | ||| Sbjct 429153 ATCCAGAAGGAGTCCACACTCCAT 429130 Score = 116 bits (128), Expect = 2e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||||||||| || ||||| ||||| || || ||||| | | Sbjct 429561 ATGCAAATCTTTGTAAAAACCCTCACAGGGAAAACCATCACCCTTGAGGTTGAACCATCA 429502 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| || |||||| | || ||||| ||||||||||| | || ||||| || Sbjct 429501 GACTCTATTGAAAATGTGAAGGCTAAAATCCAGGACAAAGAAGGAATTCCCCCAGACCAG 429442 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| || ||||| |||||||| | ||||| | || |||||| Sbjct 429441 CAGCGTCTTATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACACTTTCTGACTACAAC 429382 Query 23791 ATACAAAAAGAGTCCACATTACAT 23814 || || || ||||||||| | ||| Sbjct 429381 ATCCAGAAGGAGTCCACACTCCAT 429358 Score = 116 bits (128), Expect = 2e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||||||||| || ||||| ||||| || || ||||| | | Sbjct 429789 ATGCAAATCTTTGTAAAAACCCTCACAGGGAAAACCATCACCCTTGAGGTTGAACCATCA 429730 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| || |||||| | || ||||| ||||||||||| | || ||||| || Sbjct 429729 GACTCTATTGAAAATGTGAAGGCTAAAATCCAGGACAAAGAAGGAATTCCCCCAGACCAG 429670 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| || ||||| |||||||| | ||||| | || |||||| Sbjct 429669 CAGCGTCTTATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACACTTTCTGACTACAAC 429610 Query 23791 ATACAAAAAGAGTCCACATTACAT 23814 || || || ||||||||| | ||| Sbjct 429609 ATCCAGAAGGAGTCCACACTCCAT 429586 Score = 116 bits (128), Expect = 2e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||||||||| || ||||| ||||| || || ||||| | | Sbjct 430017 ATGCAAATCTTTGTAAAAACCCTCACAGGGAAAACCATCACCCTTGAGGTTGAACCATCA 429958 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| || |||||| | || ||||| ||||||||||| | || ||||| || Sbjct 429957 GACTCTATTGAAAATGTGAAGGCTAAAATCCAGGACAAAGAAGGAATTCCCCCAGACCAG 429898 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| || ||||| |||||||| | ||||| | || |||||| Sbjct 429897 CAGCGTCTTATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACACTTTCTGACTACAAC 429838 Query 23791 ATACAAAAAGAGTCCACATTACAT 23814 || || || ||||||||| | ||| Sbjct 429837 ATCCAGAAGGAGTCCACACTCCAT 429814 Score = 116 bits (128), Expect = 2e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||||||||| || ||||| ||||| || || ||||| | | Sbjct 430245 ATGCAAATCTTTGTAAAAACCCTCACAGGGAAAACCATCACCCTTGAGGTTGAACCATCA 430186 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| || |||||| | || ||||| ||||||||||| | || ||||| || Sbjct 430185 GACTCTATTGAAAATGTGAAGGCTAAAATCCAGGACAAAGAAGGAATTCCCCCAGACCAG 430126 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| || ||||| |||||||| | ||||| | || |||||| Sbjct 430125 CAGCGTCTTATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACACTTTCTGACTACAAC 430066 Query 23791 ATACAAAAAGAGTCCACATTACAT 23814 || || || ||||||||| | ||| Sbjct 430065 ATCCAGAAGGAGTCCACACTCCAT 430042 >seq53685 Length=437 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23603 TACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTG 23662 || || | ||||| || || || |||||||| ||||| || || || || || || |||| Sbjct 432 TAGTTGAGATGCAAATCTTTGTCAAAACCCTTACGGGTAAGACCATTACCCTTGAGGTTG 373 Query 23663 ACTCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGC 23722 | ||| | |||||| |||||| | ||| |||||| || || |||||| | || | Sbjct 372 AATCCTCCGACACTATTGAAAATGTCAAAGCTAAAATTCAAGATAAGGAAGGTATCCCAC 313 Query 23723 CAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCG 23782 |||| ||||| ||| | || || || || || ||| | ||||| | || || | | Sbjct 312 CAGACCAACAACGTCTTATTTTCGCTGGTAAGCAATTAGAAGATGGTCGTACCCTTTCTG 253 Query 23783 ATTACAACATACAAAAAGAGTCCACATTACAT 23814 |||||||||| ||||| || || || |||||| Sbjct 252 ATTACAACATCCAAAAGGAATCTACTTTACAT 221 >seq48117 Length=374 Score = 113 bits (124), Expect = 3e-20 Identities = 162/224 (72%), Gaps = 7/224 (3%) Strand=Plus/Minus Query 23600 AATTACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAG 23659 ||||| | | |||||||||||| || || ||||| || ||||| || || || || || | Sbjct 358 AATTA-TCATAATGCAGATTTTTGTAAAGACCCTTACCGGAAAGACTATAACCCTTGAGG 300 Query 23660 TTGACTCCACGGA---CACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTG 23716 |||| || | || || |||| ||| |||| ||||| || || || |||||| Sbjct 299 TTGAATCTTCCGATAGCATTGTT--AATGTTAAG-CAAAAGATCCAAGAAAAGGAAGGTA 243 Query 23717 TACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTT 23776 | || ||||||||||| |||||||| || || || || ||| | ||||| || || ||| Sbjct 242 TTCCACCAGATCAACAACGTTTAATTTTCGCTGGTAAGCAATTAGAAGATGACCGTACTC 183 Query 23777 TAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTT 23820 | || |||||||| ||||| || ||||| | ||| | ||| Sbjct 182 TTTCTGACTACAACATCCAAAAGGAATCCACCCTCCATCTTGTT 139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337669091030264