Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3918 141 1e-28 seq3345 95.1 2e-14 >seq3918 Length=790838 Score = 141 bits (156), Expect = 1e-28 Identities = 158/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 48523 CCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAA 48582 |||| |||||||| || ||||||||||| |||||||| ||||| | |||||| || | Sbjct 707525 CCAAGTTCTCATTGACAATTCCATCACTGGCAGCAAAGAATGCAAGTACATGCGAGATGA 707584 Query 48583 AATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTT 48642 ||| |||||| | | |||| || | ||||| || || ||||| || | |||||||| Sbjct 707585 AATGTTTTTCATCGTCCTTCAGGTTCTCCCAGTGGTTCATGTCTTTGGACAGATCTACTT 707644 Query 48643 CTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATT 48702 | ||||| ||||| || || || ||||| ||||| ||||| ||||| || || ||| | Sbjct 707645 CCTCAGCAGTCCAGAAGGAGGCTTCTGCCTTTTTGTACATCTTCCAAATGTCGTGGTACT 707704 Query 48703 GGATTGGGAAAATAACAAATCTATTTGGATT 48733 ||| || || | |||||| | | |||||| Sbjct 707705 TGATGGGAAATACAACAAAGCGACGTGGATT 707735 Score = 111 bits (122), Expect = 2e-19 Identities = 165/229 (72%), Gaps = 9/229 (4%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||| || || ||||| ||||| ||||| ||||| ||||| | ||| | || || Sbjct 705761 TCATCCCTGCTTATTAACTCGTTGCTGAATGTAAGACCAGGCATAATTCCCCTCTTCTTC 705820 Query 48225 AGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| ||||| || || |||| | ||||| ||||| || |||||||| || || || || Sbjct 705821 AGCCAGAATATGGCAGC-AAAGCTACCAGAGAAGAAAATCCCTTCTACAGCAGCGAAAGC 705879 Query 48284 GGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT---ATCCACCGTTGT--GCCCAATCA 48338 ||| |||||| | | || || | || ||||| |||| ||||||||| Sbjct 705880 TATAACTCTCTCAGCAAAGTCGGAATCTTGGTCCCCAATCCA--GTTGATGGCCCAATCA 705937 Query 48339 GCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGT 48387 |||||||| || ||||| ||||| || || || ||||| || || |||| Sbjct 705938 GCCTTCTTTTTGACACATGGCATGGTCTCAATGGCATTGAACAGGAAGT 705986 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 47837 CATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 47896 |||||||||||| || || ||||| || || |||||||| || ||||| || || ||||| Sbjct 704803 CATAACTCCCATCTTCTGGTATTCTCCAACTCGTTTCTCAAAGAAATTGGTCTTTCCTTC 704862 Query 47897 CAATGATATATTTTCCATAAAATCAAATGGATT 47929 |||||| || | |||||||| |||||||| || Sbjct 704863 CAATGAGATCTGCTCCATAAAGTCAAATGGGTT 704895 >seq3345 Length=2905891 Score = 95.1 bits (104), Expect = 2e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 78738 ACATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCT 78797 ||| |||| || | |||||| ||||||||||| ||||| || || || |||||||| || Sbjct 2721066 ACACCACTGAAGACTTTTTTGGTTTCCTTGTGGAGATTGGACACTGCAATTCTTGCCGCC 2721125 Query 78798 AGAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATA 78857 || ||||||||||||||||| || || |||||||| | || || || | | Sbjct 2721126 AGCTGAGCATAATCAGGATGTTTGGTGGTCATGGTGGCTGCAGTCTCGGCTGCCAGGTTG 2721185 Query 78858 TCTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATGGCGATT 78914 || | ||| | ||| ||||| ||| || || || | || ||||||| | |||| Sbjct 2721186 TCCAGCTCGACAGTGGTGACGCCAGGGTAGAGGCCATTGATGACTTTCAATGTGATT 2721242 Score = 84.2 bits (92), Expect = 3e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 77970 GGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATC 78029 || ||||| | | |||||| ||| | || |||| |||||||| || || || ||| Sbjct 2713866 GGACACATGAGCGTCCAGTCTTCATTGTTCTCTACTCTCTTCATAAATAGGTCGGGGATC 2713925 Query 78030 CATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGA 78089 || || || |||||| || || | |||| || || ||||| ||||| |||||| Sbjct 2713926 CACAGTGCGTAAAATAGGTCACGAGCCCTATTCTCCTCCTTTCCCGTATTTTTTTTACAG 2713985 Query 78090 TCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGT 78149 || | ||| || | |||||| ||||||||||||| | || || || | |||| ||| Sbjct 2713986 TCCAAAAAGTCGAACATATCACAATGCCATGGTTCCAAGTAAATGGCAAAGGCTCCTGGT 2714045 Query 78150 C 78150 | Sbjct 2714046 C 2714046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693951050829120