Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq3918 158 2e-33 >seq3918 Length=790838 Score = 158 bits (174), Expect = 2e-33 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 47013 CAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAA 47072 ||| |||||||| || ||||||||||| |||||||| ||||| | |||||| || || Sbjct 707526 CAAGTTCTCATTGACAATTCCATCACTGGCAGCAAAGAATGCAAGTACATGCGAGATGAA 707585 Query 47073 ATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTC 47132 || |||||||||| |||| || | ||||| || || ||||| || | ||||||||| Sbjct 707586 ATGTTTTTCATCGTCCTTCAGGTTCTCCCAGTGGTTCATGTCTTTGGACAGATCTACTTC 707645 Query 47133 TTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTG 47192 ||||| |||||||| || || ||||| ||||| ||||| ||||| || || | || | Sbjct 707646 CTCAGCAGTCCAGAAGGAGGCTTCTGCCTTTTTGTACATCTTCCAAATGTCGTGGTACTT 707705 Query 47193 GATCGGAAAAATAACAAATCTATTTGGATT 47222 ||| ||||| | |||||| | | |||||| Sbjct 707706 GATGGGAAATACAACAAAGCGACGTGGATT 707735 Score = 123 bits (136), Expect = 4e-23 Identities = 168/229 (73%), Gaps = 9/229 (4%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||| || || ||||| ||||| ||||| || |||||||| | ||| | ||| || Sbjct 705761 TCATCCCTGCTTATTAACTCGTTGCTGAATGTAAGACCAGGCATAATTCCCCTCTTCTTC 705820 Query 46714 AGCCAAAATATAGCCGCGAAAGAT-CCAGAAAAGAATATGCCTTCTACAGCCGCGAATGC 46772 ||||| ||||| || || |||| | ||||| ||||| || ||||||||||| ||||| || Sbjct 705821 AGCCAGAATATGGCAGC-AAAGCTACCAGAGAAGAAAATCCCTTCTACAGCAGCGAAAGC 705879 Query 46773 GACAAGTCTCTCTCCGTAACTGGCATCATTAT---GAATCCACCTTTGA--GCCCAATCA 46827 | || |||||| | | || ||| | | |||||| |||| ||||||||| Sbjct 705880 TATAACTCTCTCAGCAAAGTCGGAATCTTGGTCCCCAATCCA--GTTGATGGCCCAATCA 705937 Query 46828 GCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGT 46876 ||||| || || ||||| ||||| || || || ||||| || || |||| Sbjct 705938 GCCTTCTTTTTGACACATGGCATGGTCTCAATGGCATTGAACAGGAAGT 705986 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 46326 CATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 46385 |||||||||||| || |||||||| || || |||||||| || ||||| || || ||||| Sbjct 704803 CATAACTCCCATCTTCTGGTATTCTCCAACTCGTTTCTCAAAGAAATTGGTCTTTCCTTC 704862 Query 46386 CAATGATATATTTTCCATAAAATCAAACGGATT 46418 |||||| || | |||||||| ||||| || || Sbjct 704863 CAATGAGATCTGCTCCATAAAGTCAAATGGGTT 704895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712197778354560