Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq5158 165 2e-35 seq48397 132 1e-25 seq5520 84.2 5e-11 >seq5158 Length=501596 Score = 165 bits (182), Expect = 2e-35 Identities = 160/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| |||||||| ||||| |||||||| ||||| ||| |||||| Sbjct 429558 CAAATCTTTGTAAAAACCCTCACAGGGAAAACCATCACCCTTGAGGTTGAACCATCAGAC 429499 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || || || || || || || ||||||||||||||||| || || |||||||| Sbjct 429498 TCTATTGAAAATGTGAAGGCTAAAATCCAGGACAAAGAAGGAATTCCCCCAGACCAGCAG 429439 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || || |||||||| |||||||| | || ||| | || || ||| || Sbjct 429438 CGTCTTATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACACTTTCTGACTACAACATC 429379 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || ||||| |||||||| Sbjct 429378 CAGAAGGAGTCCACACTCCATCTTGT 429353 Score = 165 bits (182), Expect = 2e-35 Identities = 160/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| |||||||| ||||| |||||||| ||||| ||| |||||| Sbjct 429786 CAAATCTTTGTAAAAACCCTCACAGGGAAAACCATCACCCTTGAGGTTGAACCATCAGAC 429727 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || || || || || || || ||||||||||||||||| || || |||||||| Sbjct 429726 TCTATTGAAAATGTGAAGGCTAAAATCCAGGACAAAGAAGGAATTCCCCCAGACCAGCAG 429667 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || || |||||||| |||||||| | || ||| | || || ||| || Sbjct 429666 CGTCTTATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACACTTTCTGACTACAACATC 429607 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || ||||| |||||||| Sbjct 429606 CAGAAGGAGTCCACACTCCATCTTGT 429581 Score = 165 bits (182), Expect = 2e-35 Identities = 160/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| |||||||| ||||| |||||||| ||||| ||| |||||| Sbjct 430014 CAAATCTTTGTAAAAACCCTCACAGGGAAAACCATCACCCTTGAGGTTGAACCATCAGAC 429955 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || || || || || || || ||||||||||||||||| || || |||||||| Sbjct 429954 TCTATTGAAAATGTGAAGGCTAAAATCCAGGACAAAGAAGGAATTCCCCCAGACCAGCAG 429895 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || || |||||||| |||||||| | || ||| | || || ||| || Sbjct 429894 CGTCTTATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACACTTTCTGACTACAACATC 429835 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || ||||| |||||||| Sbjct 429834 CAGAAGGAGTCCACACTCCATCTTGT 429809 Score = 165 bits (182), Expect = 2e-35 Identities = 160/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| |||||||| ||||| |||||||| ||||| ||| |||||| Sbjct 430242 CAAATCTTTGTAAAAACCCTCACAGGGAAAACCATCACCCTTGAGGTTGAACCATCAGAC 430183 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || || || || || || || ||||||||||||||||| || || |||||||| Sbjct 430182 TCTATTGAAAATGTGAAGGCTAAAATCCAGGACAAAGAAGGAATTCCCCCAGACCAGCAG 430123 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || || |||||||| |||||||| | || ||| | || || ||| || Sbjct 430122 CGTCTTATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACACTTTCTGACTACAACATC 430063 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || ||||| |||||||| Sbjct 430062 CAGAAGGAGTCCACACTCCATCTTGT 430037 Score = 159 bits (176), Expect = 8e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| |||||||| ||||| |||||||| ||||| ||| |||||| Sbjct 429330 CAAATCTTTGTAAAAACCCTCACAGGGAAAACCATCACCCTTGAGGTTGAACCATCAGAC 429271 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || || || || || || || ||||||||||||||||| || || |||||||| Sbjct 429270 TCTATTGAAAATGTGAAGGCTAAAATCCAGGACAAAGAAGGAATTCCCCCAGACCAGCAG 429211 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || || |||||||| |||||||| | || || | || || ||| || Sbjct 429210 CGTCTTATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACACTCTCTGACTACAACATC 429151 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || ||||| |||||||| Sbjct 429150 CAGAAGGAGTCCACACTCCATCTTGT 429125 Score = 159 bits (176), Expect = 8e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || ||||| |||||||||||||| |||||||| ||||| ||| |||||| Sbjct 430470 CAGATCTTTGTAAAAACCCTCACAGGAAAAACTATCACCCTTGAGGTTGAACCATCAGAC 430411 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || || || || || || || ||||||||||||||||| || || |||||||| Sbjct 430410 TCTATTGAAAATGTAAAGGCTAAAATCCAGGACAAAGAAGGAATTCCCCCAGACCAGCAG 430351 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || || || ||||| |||||||| | || ||| | || || ||| || Sbjct 430350 CGTCTTATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACACTTTCTGACTACAACATC 430291 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || ||||| |||||||| Sbjct 430290 CAGAAGGAGTCCACACTCCATCTTGT 430265 >seq48397 Length=377 Score = 132 bits (146), Expect = 1e-25 Identities = 165/225 (73%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 177908 TAAGGTTAAAAT--GCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTC 177965 ||||| |||||| | | ||||||||||| ||||| || || ||||| || || ||||| Sbjct 363 TAAGGATAAAATAAGATGCAAATTTTCGTCAAAACCCTTACTGGAAAGACTATAACCCTT 304 Query 177966 GAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGA 178025 ||||| || || |||| || | || || || | |||||||| || || ||||| Sbjct 303 GAGGTTGAGTCTTCCGACAGTATTGTCAATGTTAAGAACAAGATTCAAGAAAAGGAAGGT 244 Query 178026 ATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACT 178085 || || || ||||| ||||| | || |||||||| ||||| | ||||||| || || Sbjct 243 ATTCCACCAGACCAACAACGTTTAATTTTCGCCGGTAAACAATTAGAAGATGACAGAACC 184 Query 178086 CTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTT 178130 ||| | || || ||| | ||||| ||||| || || || |||||| Sbjct 183 CTTTCTGACTACAACATTCAAAAGGAATCTACTCTTCACCTTGTT 139 >seq5520 Length=1014928 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || ||||| |||||||||||||| || ||| ||| Sbjct 746549 CAGATCTTCGTGAAGACCCTAACGGGTAAAACCATCACCCTCGAGGTCGAGCCCTCCGAC 746608 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 | || ||||| ||||| |||||||||||||| ||||| Sbjct 746609 TCGATTGAGAATGTCAAGGCCAAGATTCAGGACAAGGAAGG 746649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202456381701652