Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq4225 116 3e-21 seq48117 93.3 4e-14 >seq4225 Length=872099 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| ||||||| ||| || ||| ||||||||| ||||| |||||||| Sbjct 368111 CCTCCTCGGAGACGCAACACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGAC 368170 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || | || || ||||| || ||||| || || || ||||| ||||| | |||| Sbjct 368171 AATGTACGTCCATCTTCCAGCTGTTTACCGGCAAAGATGAGACGCTGCTGGTCTGGGGGA 368230 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCAC 41814 | | ||||||||| ||| || |||| || || | |||| | |||||| Sbjct 368231 ATCCCTTCCTTGTCCTGGATCTTG-GCTTTGACATTCTCAATGCTGTCCGATGGCTCCAC 368289 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || |||||||| |||| ||||| || || || ||||| Sbjct 368290 CTCCAATGTGATGGTTTTACCAGTCAAAGTCTTGACAAAGATTTGCAT 368337 >seq48117 Length=374 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || ||| ||||| || ||||| ||||| || Sbjct 122 CCACCACGAAGACGGAGAACAAGATGGAGGGTGGATTCCTTTTGGATGTTGTAGTCAGAA 181 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || || || || | ||||| || ||||| || | || ||||| || | ||| Sbjct 182 AGAGTACGGTCATCTTCTAATTGCTTACCAGCGAAAATTAAACGTTGTTGATCTGGTGGA 241 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCAC 41814 | | ||||| || ||| |||||||| ||| ||| | | ||| || || || Sbjct 242 ATACCTTCCTTTTCTTGGATCTTTTGCTT-AACATTAACAATGCTATCGGAAGATTCAAC 300 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | ||||| || || || || || |||||||| ||||||||||| Sbjct 301 CTCAAGGGTTATAGTCTTTCCGGTAAGGGTCTTTACAAAAATCTGCAT 348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461826335949600