Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1282 84.2 2e-11 >seq1282 Length=287270 Score = 84.2 bits (92), Expect = 2e-11 Identities = 175/259 (68%), Gaps = 10/259 (4%) Strand=Plus/Plus Query 119783 TTCATATATCGTATCTTTCCGAACACGGTACGTTCCTTCCACGCTCTGTCGTGGAGCCCC 119842 ||||| || |||||||| || ||||| | | ||| ||||| || ||||| | ||| Sbjct 32704 TTCATGTACCGTATCTTCCCAAACACACTCCTCTCCCTCCACCCTTGATCGTGAACCCCA 32763 Query 119843 GCTACGGCCCATAGGCATCCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTTA 119902 || | ||| | ||| |||||| | ||||| | || | || |||| | | | | | Sbjct 32764 CATATCGACCACATGCAACCCACGAAACCGTTCGCGTCGTTACCGTCTAGCGAGAAATGA 32823 Query 119903 TCGTTTAAGTAGATACAGACGCTT-----AACGCACTTTCAGGAGTCTCGCTCCATTCCA 119957 ||||| ||||| ||| ||| | || || ||| ||| | | |||| || | Sbjct 32824 TCGTTGAAGTA----CAG-CGCCTCCGCCAATGCTTCTTCCGGACTGGCTGTCCACTCTA 32878 Query 119958 GTAtttttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTCACGAACCATTT 120017 | ||||| |||||||||||||| | | | || ||||| || |||||||| || | | Sbjct 32879 GGATTTTCTTAGCCCAGTACATCCTCATAAACCCGTGCATCTTCCCTTCACGCACAAGCT 32938 Query 120018 GAAGTTGTGCGGCGTTCCA 120036 | ||| ||||||||||| Sbjct 32939 GTTTTTGAGCGGCGTTCCA 32957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517512606468000