Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1485 127 2e-24 seq968 109 6e-19 seq392 82.4 8e-11 >seq1485 Length=353179 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| |||||||| || || |||||| | || ||||| | | | Sbjct 325072 ATGCAAATTTTTGTCAAAACCCTCACGGGTAAGACAATCACCCTAGAGGTCGAGCCTAGC 325131 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| | ||| | |||| || |||| |||||||| || |||||| | || || Sbjct 325132 GACTCAATCGAAAATGTTAAGGCTAAGATTCAAGACAAAGAAGGTATCCCCCCAGATCAA 325191 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| ||||| || || | || ||||| | ||||||||| Sbjct 325192 CAGCGTCTTATCTTCGCCGGCAAGCAGCTAGAAGATGGTCGAACCCTTAGTGACTACAAC 325251 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||||||| || ||||||||| | |||||| Sbjct 325252 ATCCAGAAAGAAAGCACGCTGCACTTGGTGTTG 325284 >seq968 Length=289341 Score = 109 bits (120), Expect = 6e-19 Identities = 155/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || || ||||| ||||| | || || || | | Sbjct 47672 ATGCAGATCTTTGTCAAGACTCTGACTGGAAAAACTATCACTCTGGAAGTTGAGCCTTCT 47613 Query 40750 GAC---AGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 ||| | || | |||| |||||| ||||||| ||||| ||||| ||||| | ||| Sbjct 47612 GACTCGATCGAG--AACG-TCAAGGCCAAAATTCAGGACAAGGAGGGAATCCCACCCGAC 47556 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || ||| || | |||| ||| || ||||||||||| |||| || || || | |||||| Sbjct 47555 CAACAAAGATTGATCTTCGCCGGTAAACAGCTGGAAGACGGTCGAACTCTGAGTGACTAC 47496 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTT 40901 || ||||| |||||| | || || ||||| || || Sbjct 47495 AATATCCAAAAGGAGTCAACTCTCCATCTCGTCTT 47461 >seq392 Length=28663 Score = 82.4 bits (90), Expect = 8e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 117116 GGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCAT 117175 || || ||||| || || |||||| |||||| || ||||| |||||||| || || || Sbjct 19188 GGACTGATGCCTGGACTTACTTTCTCCAACGAACTGATCTCAAGGGACGAAGGACTTCAC 19247 Query 117176 TGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGC 117223 || |||||||| ||| | ||||||||||| | || ||| ||| ||| Sbjct 19248 TGTGACTTTGCGTGTCTCATGTTCAAGCATATTGTTCAGAAACCAAGC 19295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515186354776000