Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq968 86.0 9e-12 seq1485 84.2 3e-11 >seq968 Length=289341 Score = 86.0 bits (94), Expect = 9e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| | ||||| ||||| || ||| | || | || | | Sbjct 47900 ATGCAAATCTTCGTCAAGACTTTGACAGGAAAAACAATCACTCTGGAAGTGGAGCCTTCT 47841 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || | || ||| | ||| || || |||||||| ||||| || ||||| || ||| Sbjct 47840 GACTCGATAGAAAATGTCAAAGCTAAGATCCAAGATAAGGAAGGAATCCCACCCGACCAA 47781 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACA-TTAGAAGATTATAA 124717 || || || || || || || || ||| | ||||| | |||| |||| ||||| || Sbjct 47780 CAGAGACTGATCTTCGCCGGCAAGCAACTTGAGGACGGCAGAACCCTTAGT-GATTACAA 47722 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||||||||| || | || ||||| | || | ||||| || || Sbjct 47721 CATTCAAAAAGAATCCACCCTCCACTTGGTGCTCCGACTCCGAGGAGGCAT 47671 >seq1485 Length=353179 Score = 84.2 bits (92), Expect = 3e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || || || || || || || || ||||| | || | | Sbjct 325072 ATGCAAATTTTTGTCAAAACCCTCACGGGTAAGACAATCACCCTAGAGGTCGAGCCTAGC 325131 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||| ||| | || || |||||||| ||||||||||| || || |||||| Sbjct 325132 GACTCAATCGAAAATGTTAAGGCTAAGATTCAAGACAAAGAAGGTATCCCCCCAGATCAA 325191 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAA-CATTAGAAGATTATAA 124717 || | ||||| || || || || || |||| ||| |||||| | |||| || || || Sbjct 325192 CAGCGTCTTATCTTCGCCGGCAAGCAGCTAGAAGATGGTCGAACCCTTAG-TGACTACAA 325250 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTT 124750 || || |||||| || |||| ||||| || Sbjct 325251 CATCCAGAAAGAAAGCACGCTGCACTTGGTGTT 325283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755407839680000