Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq968 125 6e-24 seq1485 113 4e-20 >seq968 Length=289341 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| | | ||||| |||||||| | || ||||| || |||||||||||||| ||| Sbjct 46433 CCTCCTCTCAGTCTCAGGACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAATCACTC 46492 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | |||||| |||||| | ||| || |||||| |||| ||||| || ||||||||||| Sbjct 46493 AGAGTGCGGCCATCCTCCAACTGCTTGCCAGCGAAGATCAGACGTTGTTGATCGGGAGGA 46552 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || || || |||||| ||||| || || | |||| | || | ||| || Sbjct 46553 ATTCCTTCTTTGTCTTGGATTTTCGCCTTTACGTTCTCGATCGAATCGGATGGCTCAACT 46612 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| ||| | || ||||| |||| || || || || |||||||| Sbjct 46613 TCGAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 46659 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || ||||| ||||| || ||||| || |||| ||| || || || |||||| Sbjct 47470 TGGAGAGTTGACTCCTTTTGGATATTGTAGTCACTCAGAGTTCGACCGTCTTCCAGCTGT 47529 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || || ||| |||| | | || || ||||| || || ||||||||||| |||||| Sbjct 47530 TTACCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATTCCCTCCTTGTCCTGAATTTTG 47589 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | |||| | ||| | ||| || || | || | ||||| || ||| Sbjct 47590 GCCTTGACGTTCTCGATCGAGTCAGAAGGCTCAACTTCCAGAGTGATAGTTTTTCCAGTC 47649 Query 118716 AGAGTTTTTACAAAAATCTGCATGGCT 118742 ||||| || ||||| ||||||||| || Sbjct 47650 AGAGTCTTGACAAAGATCTGCATGCCT 47676 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | || | ||||||||||| || || |||||||||||||||||||| || Sbjct 47674 CCTCCTCGGAGTCGGAGCACCAAGTGGAGGGTGGATTCTTTTTGAATGTTGTAATCACTA 47733 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || | ||||| || || || || ||| |||| || | ||| || ||||| || Sbjct 47734 AGGGTTCTGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAGTCTCTGTTGGTCGGGTGGG 47793 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || || ||||| ||| || || ||| || | ||| | | ||| | ||| || Sbjct 47794 ATTCCTTCCTTATCTTGGATCTTAGCTTTGACATTTTCTATCGAGTCAGAAGGCTCCACT 47853 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || | || | ||||| || |||| ||| || || || || |||||| || Sbjct 47854 TCCAGAGTGATTGTTTTTCCTGTCAAAGTCTTGACGAAGATTTGCATGCCT 47904 >seq1485 Length=353179 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 118524 CTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA 118583 |||||||||||||| | || ||||| || |||||||| || || | || || | Sbjct 325286 CTCAACACCAAGTGCAGCGTGCTTTCTTTCTGGATGTTGTAGTCACTAAGGGTTCGACCA 325227 Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 || || ||||| || || ||| |||| |||||||| ||||| || || || || || ||| Sbjct 325226 TCTTCTAGCTGCTTGCCGGCGAAGATAAGACGCTGTTGATCTGGGGGGATACCTTCTTTG 325167 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 ||| ||| || ||||| | ||||| | ||| | ||||||||| | ||| | Sbjct 325166 TCTTGAATCTTAGCCTTAACATTTTCGATTGAGTCGCTAGGCTCGACCTCTAGGGTGATT 325107 Query 118704 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || ||||| |||||||| ||||| Sbjct 325106 GTCTTACCCGTGAGGGTTTTGACAAAAATTTGCAT 325072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433803434729200