Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq2340 105 8e-18 seq3689 104 3e-17 seq1985 104 3e-17 seq806 104 3e-17 seq321 104 3e-17 seq968 89.7 6e-13 >seq2340 Length=352566 Score = 105 bits (116), Expect = 8e-18 Identities = 77/89 (87%), Gaps = 3/89 (3%) Strand=Plus/Minus Query 60049 CGTTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGC 60108 |||| ||||||| |||| || |||||||||||||||||||| |||||||||||||| Sbjct 268119 CGTTATTGAAAAAG---CTCCCCGACAGGGAATCGAACCCTGGTCGCCCGCGTGACAGGC 268063 Query 60109 GGACATACTCACCACTATACTACCGAGGA 60137 || |||||||||||||||||| |||||| Sbjct 268062 GGGAATACTCACCACTATACTATCGAGGA 268034 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || |||||||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 267836 CTCCCCGACAGGGAATCGAACCCTGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 267895 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 267896 TACTATCGAGGA 267907 >seq3689 Length=268539 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || |||||||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 31285 CTCCCCGACAGGGAATCGAACCCTGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 31226 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 31225 TACTATCGAGGA 31214 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || |||||||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 31842 CTCCCCGACAGGGAATCGAACCCTGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 31783 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 31782 TACTATCGAGGA 31771 >seq1985 Length=140083 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || |||||||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 18152 CTCCCCGACAGGGAATCGAACCCTGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 18211 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 18212 TACTATCGAGGA 18223 >seq806 Length=119131 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || |||||||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 89988 CTCCCCGACAGGGAATCGAACCCTGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 90047 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 90048 TACTATCGAGGA 90059 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || |||||||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 90270 CTCCCCGACAGGGAATCGAACCCTGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 90329 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 90330 TACTATCGAGGA 90341 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || |||||||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 90704 CTCCCCGACAGGGAATCGAACCCTGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 90763 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 90764 TACTATCGAGGA 90775 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || |||||||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 90964 CTCCCCGACAGGGAATCGAACCCTGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 90905 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 90904 TACTATCGAGGA 90893 >seq321 Length=199883 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || |||||||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 196300 CTCCCCGACAGGGAATCGAACCCTGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 196241 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 196240 TACTATCGAGGA 196229 >seq968 Length=289341 Score = 89.7 bits (98), Expect = 6e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 42950 CTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTA 43009 ||| ||||||||||| | | || ||||| || | || |||||| ||||| ||||| Sbjct 46426 CTACTGTCCTCCTCTCAGTCTCAGGACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTA 46485 Query 43010 ATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069 |||| |||||| || | || || | |||||| |||||||| || || || || || || Sbjct 46486 ATCACTCAGAGTGCGGCCATCCTCCAACTGCTTGCCAGCGAAGATCAGACGTTGTTGATC 46545 Query 43070 GGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGA 43129 || || | | || ||||| |||||| || | || | | || ||| | Sbjct 46546 GGGAGGAATTCCTTCTTTGTCTTGGATTTTCGCCTTTACGTTCTCGATCGAATCGGATGG 46605 Query 43130 TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || |||| || ||||| ||||| || | ||||| || ||||| ||||| Sbjct 46606 CTCAACTTCGAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 46659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571781146628000