Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq802 93.3 3e-14 seq1485 91.5 1e-13 seq968 87.8 1e-12 >seq802 Length=67242 Score = 93.3 bits (102), Expect = 3e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 34172 AGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGG 34231 || |||| || |||||||||||||| || ||||||||||||||||| |||| | | | Sbjct 46563 AGTCTCAAAACAAGGTGTAAAGTACTCTCCTTCTGTATGTTGTAGTCTGACAACGTCCTG 46622 Query 34232 TCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275 | || |||||||| ||||| ||||| || ||||| || ||||| Sbjct 46623 TAATCTTCCAACTGTTTGCCGGCGAAGATAAGCCGTTGTTGGTC 46666 >seq1485 Length=353179 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34174 CCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTC 34233 ||||| ||||| ||| | || ||||||||||| ||||||||||| || || | Sbjct 325287 CCTCAACACCAAGTGCAGCGTGCTTTCTTTCTGGATGTTGTAGTCACTAAGGGTTCGACC 325228 Query 34234 GTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTT 34293 || || | ||||||||| ||||| || || ||||| || || ||| | | || || Sbjct 325227 ATCTTCTAGCTGCTTGCCGGCGAAGATAAGACGCTGTTGATCTGGGGGGATACCTTCTTT 325168 Query 34294 GTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGAT 34353 ||| ||||| ||| | || | || || ||| | | ||||| || | ||||| Sbjct 325167 GTCTTGAATCTTAGCCTTAACATTTTCGATTGAGTCGCTAGGCTCGACCTCTAGGGTGAT 325108 Query 34354 GGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTCGAATGGT 34401 || || || ||||| ||||| ||||| || |||||| || ||| || Sbjct 325107 TGTCTTACCCGTGAGGGTTTTGACAAAAATTTGCATCCCTAAAATAGT 325060 >seq968 Length=289341 Score = 87.8 bits (96), Expect = 1e-12 Identities = 173/254 (68%), Gaps = 4/254 (2%) Strand=Plus/Plus Query 34138 TTCTTCGTTGCAGATTTCGTCGAAT--CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTA 34195 || ||||||| | |||||| | | || || | ||| ||||| |||| ||| | ||| Sbjct 46408 TTTTTCGTTGAGG--TTCGTCTACTGTCCTCCTCTCAGTCTCAGGACCAAGTGAAGAGTT 46465 Query 34196 CTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCG 34255 || ||||| |||||||| || ||| ||| | || |||||||||||||| ||| Sbjct 46466 GACTCCTTCTGAATGTTGTAATCACTCAGAGTGCGGCCATCCTCCAACTGCTTGCCAGCG 46525 Query 34256 AAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGA 34315 || || || || || || ||| || | | || ||||| || || ||||| Sbjct 46526 AAGATCAGACGTTGTTGATCGGGAGGAATTCCTTCTTTGTCTTGGATTTTCGCCTTTACG 46585 Query 34316 TCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTC 34375 | | |||||||||| | || || || | || ||||| ||||| || | || ||| Sbjct 46586 TTCTCGATCGAATCGGATGGCTCAACTTCGAGGGTAATGGTCTTGCCAGTCAAGGTCTTC 46645 Query 34376 ACAAAGATCTGCAT 34389 || ||||||||||| Sbjct 46646 ACGAAGATCTGCAT 46659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323051919056000