Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq968 131 1e-25 seq392 86.0 6e-12 seq789 84.2 2e-11 seq1337 82.4 7e-11 seq387 82.4 7e-11 >seq968 Length=289341 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| ||||| || || ||| |||| ||||| || ||| Sbjct 46659 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATTACCCTCGAAGTTGAGCCATCC 46600 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || |||| | || || || ||| ||||| ||||| | || ||||| || Sbjct 46599 GATTCGATCGAGAACGTAAAGGCGAAAATCCAAGACAAAGAAGGAATTCCTCCCGATCAA 46540 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || ||||||||||| |||||||| || ||| |||| ||||| ||| Sbjct 46539 CAACGTCTGATCTTCGCTGGCAAGCAGTTGGAGGATGGCCGCACTCTGAGTGATTACAAC 46480 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || || |||||||| |||| || |||||||| || || Sbjct 46479 ATTCAGAAGGAGTCAACTCTTCACTTGGTCCTGAGACTGAGAGGAGG 46433 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||||||||| || ||||| ||||| | || ||||| || || Sbjct 47673 CATGCAGATCTTTGTCAAGACTCTGACTGGAAAAACTATCACTCTGGAAGTTGAGCCTTC 47614 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| |||| | ||||| | ||| ||||||||| || | || |||||||| Sbjct 47613 TGACTCGATCGAGAACGTCAAGGCCAAAATTCAGGACAAGGAGGGAATCCCACCCGACCA 47554 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || | | || ||||| || |||||| |||||||| | ||| |||| || || || Sbjct 47553 ACAAAGATTGATCTTCGCCGGTAAACAGCTGGAAGACGGTCGAACTCTGAGTGACTACAA 47494 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||| || || ||||| ||||| || | || ||||| || || Sbjct 47493 TATCCAAAAGGAGTCAACTCTCCATCTCGTCTTAAGGCTGAGAGGAGG 47446 Score = 111 bits (122), Expect = 1e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| |||||| ||||||| ||||| ||||| | || || || || || Sbjct 47901 CATGCAAATCTTCGTCAAGACTTTGACAGGAAAAACAATCACTCTGGAAGTGGAGCCTTC 47842 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | |||| |||||| | || || |||||||| | || |||||||| Sbjct 47841 TGACTCGATAGAAAATGTCAAAGCTAAGATCCAAGATAAGGAAGGAATCCCACCCGACCA 47782 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | || || ||||| ||||| || | || ||| | || | || ||||| || Sbjct 47781 ACAGAGACTGATCTTCGCCGGCAAGCAACTTGAGGACGGCAGAACCCTTAGTGATTACAA 47722 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||||||| || || || |||| || |||| Sbjct 47721 CATTCAAAAAGAATCCACCCTCCACTTGGTGCTCCGACT 47683 >seq392 Length=28663 Score = 86.0 bits (94), Expect = 6e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || ||| |||||||||||| || ||||||||||| || ||||| || ||||| || || Sbjct 16531 TTCTCAGTAGAAGTGCAAGTTACAGAGGCGAGATGTTTCTACGGTTTCCAAGTTGCGATC 16590 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGG 57858 || ||||| || || ||||||||| || || || || | |||| | |||| Sbjct 16591 GAGAACGTTCACTCTGAAATGTATAGTCTCCTGATTGACATGTACATCAAGG 16642 >seq789 Length=365404 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 23081 GTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCAC 23140 ||||| || |||||||| || || || ||||| || |||||| || || | |||| Sbjct 30368 GTACAGAGGTTGCTACATTTGATGGTTCCCAAGTTCTGCTGGTTACTCTTCCTGTTGCTA 30309 Query 23141 GAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGC 23196 | ||||||||| | |||||||||||| |||||||| | ||| |||||||| || Sbjct 30308 GCATCCTTGTACACCATGTACGGCGTCCCCGTCTCAATCTGACTGTCGATGATAGC 30253 >seq1337 Length=66774 Score = 82.4 bits (90), Expect = 7e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 31301 CCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATG 31360 || |||||||| || ||||| || |||||||| || ||||||||||| | ||| | Sbjct 40966 CCTCCCGACCAACAACGTCTTATTTTCGCTGGGAAGCAGTTGGAAGATGGTCGAACTCTT 41025 Query 31361 AGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||| || |||||||| ||||| || |||||||| || ||| |||| Sbjct 41026 AGCGACTACAACATTCAGAAAGAGAGTACCCTTCATCTTGTTCTTCGACT 41075 >seq387 Length=79051 Score = 82.4 bits (90), Expect = 7e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 31301 CCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATG 31360 || || || || |||||||| || || || || ||||||||||||||| | ||| || Sbjct 24598 CCACCTGATCAACAGCGTCTGATTTTTGCGGGTAAACAGTTGGAAGACGGGAGGACCCTG 24657 Query 31361 AGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| || ||||| || ||||| || ||||||||||| | |||||| | || ||| Sbjct 24658 AGCGACTACAACATCCAGAAAGAGAGTACCCTTCATCTGGTGTTGAGACTGCGAGGAGGT 24717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445737982392000