Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq968 127 2e-24 seq1485 93.3 4e-14 >seq968 Length=289341 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||||| || ||||| || |||||||| ||||| |||| |||| || || Sbjct 46451 ACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAATCACTCAGAGTGCGGCCATCCTCC 46510 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | ||| || ||||| ||||||||||||| ||||||||||| || ||||||||||| | Sbjct 46511 AACTGCTTGCCAGCGAAGATCAGACGTTGTTGATCGGGAGGAATTCCTTCTTTGTCTTGG 46570 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 ||||| |||| | || | | |||| ||||| || || | ||| | |||||| Sbjct 46571 ATTTTCGCCTTTACGTTCTCGATCGAATCGGATGGCTCAACTTCGAGGGTAATGGTCTTG 46630 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || ||||| || || ||||| || |||||| || Sbjct 46631 CCAGTCAAGGTCTTCACGAAGATCTGCATACCT 46663 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| ||||| | || | || ||||| | || || |||||||||||||| ||||| || Sbjct 47673 GCCTCCTCGGAGTCGGAGCACCAAGTGGAGGGTGGATTCTTTTTGAATGTTGTAATCACT 47732 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || || ||| || || || || || || ||||||| | || || ||||| || Sbjct 47733 AAGGGTTCTGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAGTCTCTGTTGGTCGGGTGG 47792 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| || || ||| || ||| | | ||| | | ||| | |||||||| Sbjct 47793 GATTCCTTCCTTATCTTGGATCTTAGCTTTGACATTTTCTATCGAGTCAGAAGGCTCCAC 47852 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || || || ||||| || || ||||| |||||||| Sbjct 47853 TTCCAGAGTGATTGTTTTTCCTGTCAAAGTCTTGACGAAGATTTGCAT 47900 >seq1485 Length=353179 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG-- 139609 ||| || ||||| | ||| ||||| || ||||| || || || | || |||| Sbjct 325284 CAACACCAAGTGCAGCGTGCTTTCTTTCTGGATGTTGTAGTCACTAAGGGT--TCGACCA 325227 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || || |||| ||||| || ||||| || || || ||||||||| Sbjct 325226 TCTTCTAGCTGCTTGCCGGCGAAGATAAGACGCTGTTGATCTGGGGGGATACCTTCTTTG 325167 Query 139670 TCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| | || | ||| | | ||| | || |||| | ||||| ||||| | ||| | Sbjct 325166 TC-TTGAATCTTAGCCTTAACATTTTCGATTGAGTCGCTAGGCTCGACCTCTAGGGTGAT 325108 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || || | ||||| || || |||||||| Sbjct 325107 TGTCTTACCCGTGAGGGTTTTGACAAAAATTTGCAT 325072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496032375920000