Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq968 89.7 4e-13 seq1485 82.4 6e-11 seq387 82.4 6e-11 >seq968 Length=289341 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | ||| ||||| || | ||||| ||| ||||||||| | |||||| || | Sbjct 47446 CCTCCTCTCAGCCTTAAGACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAGTCACTC 47505 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || |||| |||| ||||| ||||| || ||||||| ||||| |||| || Sbjct 47506 AGAGTTCGACCGTCTTCCAGCTGTTTACCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 47565 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || || || || |||| | | ||||| | | | | ||| || ||| || Sbjct 47566 ATTCCCTCCTTGTC-CTGAATTTTGGCCTTGACGTTCTCGATCGAGTCAGAAGGCTCAAC 47624 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||||||||| || ||||| || ||||| || ||||| Sbjct 47625 TTCCAGAGTGATAGTTTTTCCAGTCAGAGTCTTGACAAAGATCTGCAT 47672 >seq1485 Length=353179 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 42895 CTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCG 42954 || |||||||| || | ||||| || || || | ||||| || | || || | Sbjct 325286 CTCAACACCAAGTGCAGCGTGCTTTCTTTCTGGATGTTGTAGTCACTAAGGGTTCGACCA 325227 Query 42955 TCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTT 43014 || || | || |||||||| || || | ||||||||||| | || | ||||||||| Sbjct 325226 TCTTCTAGCTGCTTGCCGGCGAAGATAAGACGCTGTTGATCTGGGGGGATACCTTCTTTG 325167 Query 43015 TCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATA 43074 || ||| | || || | | | || ||||| || |||||| |||| || || Sbjct 325166 TCTTGAATCTTAGCCTTAACATTTTCGATTGAGTCGCTAGGCTCGACCTCTAGGGTGATT 325107 Query 43075 GTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || || || || ||||| |||||||||||||| Sbjct 325106 GTCTTACCCGTGAGGGTTTTGACAAAAATTTGCAT 325072 >seq387 Length=79051 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| |||||||| ||||||| ||| | || ||||| || || | ||||| ||| | Sbjct 24716 CCTCCTCGCAGTCTCAACACCAGATGAAGGGTACTCTCTTTCTGGATGTTGTAGTCGCTC 24657 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATC 42995 | || | |||| ||||| ||||| || |||||||||| ||||||||||| Sbjct 24656 AGGGTCCTCCCGTCTTCCAACTGTTTACCCGCAAAAATCAGACGCTGTTGATC 24604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381345895495800