Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19]
5,100 sequences; 155,865,547 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq968 118 8e-22
seq1485 109 4e-19
>seq968
Length=289341
Score = 118 bits (130), Expect = 8e-22
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|| ||||||| ||| | || || ||||| || || || || || ||||||||||| ||
Sbjct 46433 CCTCCTCTCAGTCTCAGGACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAATCACTC 46492
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
||| | | | || || || || ||||||||| | |||| ||||||||| ||| |||
Sbjct 46493 AGAGTGCGGCCATCCTCCAACTGCTTGCCAGCGAAGATCAGACGTTGTTGATCGGGAGGA 46552
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|||||||||||||| ||||| |||||| | || || | |||| || ||
Sbjct 46553 ATTCCTTCTTTGTCTTGGATTTTCGCCTTTACGTTCTCGATCGAATCGGATGGCTCAACT 46612
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| | ||||||||| || || |||| || || || || || ||||||
Sbjct 46613 TCGAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCATA 46660
Score = 111 bits (122), Expect = 1e-19
Identities = 152/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| || || |||||||| |||||||| ||||||||||| || || |||| |||| ||
Sbjct 47692 ACCAAGTGGAGGGTGGATTCTTTTTGAATGTTGTAATCACTAAGGGTTCTGCCGTCCTCA 47751
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
| ||| ||||| ||| | |||| | ||||||||| ||| |||||||| || ||
Sbjct 47752 AGTTGCTTGCCGGCGAAGATCAGTCTCTGTTGGTCGGGTGGGATTCCTTCCTTATCTTGG 47811
Query 15275 AT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333
|| || ||| || ||| ||||||| | || | || || || | || || |||||
Sbjct 47812 ATCTTAGCT-TTGACATTTTCTATCGAGTCAGAAGGCTCCACTTCCAGAGTGATTGTTTT 47870
Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
||||||| ||| || || || ||||||||
Sbjct 47871 TCCTGTCAAAGTCTTGACGAAGATTTGCAT 47900
>seq1485
Length=353179
Score = 109 bits (120), Expect = 4e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 15149 CTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCG 15208
|| || || || || || ||| ||||| || |||||||| || || || ||| |
Sbjct 325286 CTCAACACCAAGTGCAGCGTGCTTTCTTTCTGGATGTTGTAGTCACTAAGGGTTCGACCA 325227
Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268
||||||| || ||||| ||| | || | ||| ||||| || || || |||||||||
Sbjct 325226 TCTTCTAGCTGCTTGCCGGCGAAGATAAGACGCTGTTGATCTGGGGGGATACCTTCTTTG 325167
Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328
|| ||| || ||| ||| |||| || | |||||| || || |||| ||| ||
Sbjct 325166 TCTTGAATCTTAGCCTTAACATTTTCGATTGAGTCGCTAGGCTCGACCTCTAGGGTGATT 325107
Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| ||||| || || ||||| ||||||||||||||
Sbjct 325106 GTCTTACCCGTGAGGGTTTTGACAAAAATTTGCAT 325072
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362156688299100
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |