Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq968 109 1e-18 seq802 84.2 5e-11 >seq968 Length=289341 Score = 109 bits (120), Expect = 1e-18 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| ||||| || || || || | || | || || || |||||||| || || ||| Sbjct 46432 TCCTCCTCTCAGTCTCAGGACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAATCACT 46491 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 ||||| | || || || | || || ||||| || || || | |||||||| ||||| Sbjct 46492 CAGAGTGCGGCCATCCTCCAACTGCTTGCCAGCGAAGATCAGACGTTGTTGATCGGGAGG 46551 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511 ||||||||||| || || || || || ||||| || || | | |||| || || || Sbjct 46552 AATTCCTTCTTTGTCTTGGATTTTCGCCTTTACGTTCTCGATCGAATCGGATGGCTCAAC 46611 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || ||||| ||||| ||||| | || || || || |||||||| Sbjct 46612 TTCGAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 46659 Score = 105 bits (116), Expect = 2e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||||||||| || | |||||| ||||| || |||||||||||||| || ||||| Sbjct 48828 TTACCAGCAAAAATCAGACGCTGTTGGTCAGGGGGGATTCCTTCTTTATCTTGGATCTTA 48887 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| || || || | | |||| || || || || || ||||| ||||| ||||| Sbjct 48888 GCTTTGACGTTCTCGATCGAATCGGATGGCTCAACTTCGAGGGTAATGGTCTTGCCAGTC 48947 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 | || || || || |||||||| Sbjct 48948 AAGGTCTTCACGAAGATCTGCAT 48970 >seq802 Length=67242 Score = 84.2 bits (92), Expect = 5e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || |||||||| || | || || ||||| ||| || ||||| || || ||||| || Sbjct 46554 CCACCTCTTAGTCTCAAAACAAGGTGTAAAGTACTCTCCTTCTGTATGTTGTAGTCTGAC 46613 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | || || ||||| | ||||| || || || || |||| ||||| |||||||| Sbjct 46614 AACGTCCTGTAATCTTCCAACTGTTTGCCGGCGAAGATAAGCCGTTGTTGGTCAGGAGGA 46673 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || |||||||||||||| || | | ||| | | |||| || || ||| Sbjct 46674 ATGCCTTCTTTATCCTGTATGTATTGTTTAAGTTCACCTACTGTCATGCAGCCTTCAGAG 46733 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | || || ||| || ||||| |||||||| ||| Sbjct 46734 TCCAATGAAACAGTTTTGCCAGTTAGTGTTTTCACA 46769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151323163310800