Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq968 140 3e-28 seq1485 98.7 9e-16 >seq968 Length=289341 Score = 140 bits (154), Expect = 3e-28 Identities = 173/235 (74%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || ||||||||||| | || || | || | ||| || |||||||| | || || || Sbjct 47442 CATTCCTCCTCTCAGCCTTAAGACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAGTC 47501 Query 94837 GCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCT 94894 ||| || ||| || || ||||||||||| ||| | ||||| |||||||| || || Sbjct 47502 ACTC--AGAGTTCGACCGTCTTCCAGCTGTTTACCGGCGAAGATCAATCTTTGTTGGTCG 47559 Query 94895 GGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG 94954 || || || || || ||||| | |||||| ||||||||| ||| | ||||| | Sbjct 47560 GGTGGGATTCCCTCCTTGTCCTGAATTTTGGCCTTGACGTTCTCGATCGAGTCAGAAGGC 47619 Query 94955 TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || | ||||| ||||||||||| ||||| || |||||||||||||||| Sbjct 47620 TCAACTTCCAGAGTGATAGTTTTTCCAGTCAGAGTCTTGACAAAGATCTGCATGC 47674 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 ||||||||||| || || |||||||| | ||| || ||||| || | ||| ||||| || Sbjct 46432 TCCTCCTCTCAGTCTCAGGACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAATCACT 46491 Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899 || |||| | |||||||| ||| || || | ||||| | | ||| ||||| ||||| Sbjct 46492 CAGAGTGCGGCCATCCTCCAACTGCTTGCCAGCGAAGATCAGACGTTGTTGATCGGGAGG 46551 Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959 ||| ||||||||||| | ||||| ||||| ||| ||| | || | | || || Sbjct 46552 AATTCCTTCTTTGTCTTGGATTTTCGCCTTTACGTTCTCGATCGAATCGGATGGCTCAAC 46611 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || ||||| || ||||| | || ||||| ||||||||||| Sbjct 46612 TTCGAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 46659 >seq1485 Length=353179 Score = 98.7 bits (108), Expect = 9e-16 Identities = 169/240 (70%), Gaps = 8/240 (3%) Strand=Plus/Minus Query 94795 CAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--A 94852 |||||||||||||| || ||| || || | ||| || || || | | ||| || | Sbjct 325284 CAACACCAAGTGCAGCGTGCTTTCTTTCTGGATGTTGTAGTCACTAA--GGGTTCGACCA 325227 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || ||||| || ||| | ||||| | | || |||||||| || |||||||||||| Sbjct 325226 TCTTCTAGCTGCTTGCCGGCGAAGATAAGACGCTGTTGATCTGGGGGGATACCTTCTTTG 325167 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGAT 94971 || | ||| || ||||| || ||| | ||| || || ||||| || | ||||| Sbjct 325166 TCTTGAATCTTAGCCTTAACATTTTCGATTGAGTC-GCTAGGCTCGACCTCTAGGGTGAT 325108 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTACAACATATTTGAGTTGTCA 95031 || || || || || ||||| ||||| || ||||| | | || ||| || ||| |||| Sbjct 325107 TGTCTTACCCGTGAGGGTTTTGACAAAAATTTGCATCCCT--AAAATAGTTTAGTGGTCA 325050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448262621436000