Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq968 132 5e-26 seq789 91.5 1e-13 seq1485 87.8 2e-12 >seq968 Length=289341 Score = 132 bits (146), Expect = 5e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 131022 CAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTC 131081 ||| || || || | || |||||||| |||||||||||||| |||| ||||| || Sbjct 46447 CAGGACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAATCACTCAGAGTGCGGCCATC 46506 Query 131082 CTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 ||| | ||||||||| ||| |||| | ||| || || || ||||| |||||||||||||| Sbjct 46507 CTCCAACTGCTTGCCAGCGAAGATCAGACGTTGTTGATCGGGAGGAATTCCTTCTTTGTC 46566 Query 131142 GGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201 ||||||| ||| | | ||| | | ||||| | ||| | |||| ||||| ||| Sbjct 46567 TTGGATTTTCGCCTTTACGTTCTCGATCGAATCGGATGGCTCAACTTCGAGGGTAATGGT 46626 Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || | || || ||||| |||||||| Sbjct 46627 CTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 46659 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | || ||||| || || | ||| || || ||||||||||||||||| || Sbjct 47673 GCCTCCTCGGAGTCGGAGCACCAAGTGGAGGGTGGATTCTTTTTGAATGTTGTAATCACT 47732 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| | |||||| || |||||||| ||| |||| | | ||| ||||| || || Sbjct 47733 AAGGGTTCTGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAGTCTCTGTTGGTCGGGTGG 47792 Query 131127 GATTCCTTCTTTGTC 131141 ||||||||| || || Sbjct 47793 GATTCCTTCCTTATC 47807 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || ||||||||||| || ||||| || |||| || || ||| || ||||| || || Sbjct 47476 GTTGACTCCTTTTGGATATTGTAGTCACTCAGAGTTCGACCGTCTTCCAGCTGTTTACCG 47535 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| |||| || | || ||||| || |||||||| || ||||| ||||| |||| Sbjct 47536 GCGAAGATCAATCTTTGTTGGTCGGGTGGGATTCCCTCCTTGTCCTGAATTTTGGCCTTG 47595 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | ||| | | || | | ||| | || | || | ||||| || || ||||| Sbjct 47596 ACGTTCTCGATCGAGTCAGAAGGCTCAACTTCCAGAGTGATAGTTTTTCCAGTCAGAGTC 47655 Query 131218 TTTACGAAAATCTGCATGACT 131238 || || || ||||||||| || Sbjct 47656 TTGACAAAGATCTGCATGCCT 47676 >seq789 Length=365404 Score = 91.5 bits (100), Expect = 1e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 145694 TTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTG 145753 |||||||||||||||||||||| || ||||| ||||| |||||||||| || |||||| Sbjct 30359 TTGCTACATTTGATGGTTCCCAAGTTCTGCTGGTTACTCTTCCTGTTGCTAGCATCCTTG 30300 Query 145754 TAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATA 145798 || | ||||||||| || ||||| | ||| | || | |||| Sbjct 30299 TACACCATGTACGGCGTCCCCGTCTCAATCTGACTGTCGATGATA 30255 >seq1485 Length=353179 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 131044 TCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAG 131103 || || || |||||||| || || | ||| || || |||||||||||||| ||| || Sbjct 325262 TCTTTCTGGATGTTGTAGTCACTAAGGGTTCGACCATCTTCTAGCTGCTTGCCGGCGAAG 325203 Query 131104 ATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGC 131163 || | |||||| || || || ||||| ||||||||||| || || ||| | | Sbjct 325202 ATAAGACGCTGTTGATCTGGGGGGATACCTTCTTTGTCTTGAATCTTAGCCTTAACATTT 325143 Query 131164 TCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACG 131223 || | | ||| | | ||||| || | ||| | || ||||| || || ||||| || Sbjct 325142 TCGATTGAGTCGCTAGGCTCGACCTCTAGGGTGATTGTCTTACCCGTGAGGGTTTTGACA 325083 Query 131224 AAAATCTGCAT 131234 ||||| ||||| Sbjct 325082 AAAATTTGCAT 325072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471982709184000