Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1223 140 2e-28 seq968 116 2e-21 seq1042 105 4e-18 seq1485 87.8 1e-12 seq1337 86.0 4e-12 >seq1223 Length=156115 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 6113 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 6172 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 6173 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 6207 >seq968 Length=289341 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || ||||||| | || ||||| |||||||| |||||| ||||| ||||||||| | Sbjct 46433 CCTCCTCTCAGTCTCAGGACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAATCACTC 46492 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || | || || || || || || || || || || ||||||||||||| || Sbjct 46493 AGAGTGCGGCCATCCTCCAACTGCTTGCCAGCGAAGATCAGACGTTGTTGATCGGGAGGA 46552 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||||| ||||| ||| || |||| || | ||| |||||| Sbjct 46553 ATTCCTTCTTTGTCTTGGATTTTCGCCTTTACGTTCTCGATCGAATCGGATGGCTCAACT 46612 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | ||||| || || || |||||||| |||||||| |||||||| Sbjct 46613 TCGAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 46659 >seq1042 Length=108822 Score = 105 bits (116), Expect = 4e-18 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 6319 ACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACG 6378 |||||||||| |||||||||||||| || || || ||||| |||| ||||| | | Sbjct 17083 ACCCGACGAAGTATTTCGGGTGCGAGCTAGGAGCGCAGACAACAATTGACCACAAGACGG 17024 Query 6379 AGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCT 6438 | | ||| || |||||||| || | | | | |||| |||||||| | | ||||| | Sbjct 17023 ACAAGTACATAGTGAACGGATCACACACCGCCGACAAGATGCAGGACATCTTGGACGGTT 16964 Query 6439 TTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGAC 6484 |||||| ||||||||| |||||| |||| || ||||| || || Sbjct 16963 TTATTCAGAAGTTTGTGTTGTGTCCCAAATGTGAGAACCCCGAAAC 16918 >seq1485 Length=353179 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/217 (70%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG-- 38162 ||||||||| || || ||||| || || || || ||||| ||| | || ||||| Sbjct 325284 CAACACCAAGTGCAGCGTGCTTTCTTTCTGGATGTTGTAGTCA--CTAAGG--GTTCGAC 325229 Query 38163 --TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTT 38220 || |||| || || ||||| || || || || |||||||| | ||||| ||||||| Sbjct 325228 CATCTTCTAGCTGCTTGCCGGCGAAGATAAGACGCTGTTGATCTGGGGGGATACCTTCTT 325169 Query 38221 TGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAA 38280 |||| ||| || ||| ||||| | || | || | | || || |||| || | Sbjct 325168 TGTCTTGAATCTTAGCCTTAACATTTTCGATTGAGTCGCTAGGCTCGACCTCTAGGGTGA 325109 Query 38281 TAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || |||||||| | |||||| || || || ||||| Sbjct 325108 TTGTCTTACCCGTGAGGGTTTTGACAAAAATTTGCAT 325072 >seq1337 Length=66774 Score = 86.0 bits (94), Expect = 4e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 38214 CCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCT 38273 |||||||||||| ||||| |||||||||| | | || | |||||| || Sbjct 40758 CCTTCTTTGTCCTGTATTTTAGCTTTCACATTCTCTATCGAGTCAGAAGGTTCAACCTCG 40699 Query 38274 AATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | ||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 40698 AGGGTAATGGTTTTACCCGTTAAGGTTTTCACGAATATCTGCATGTT 40652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334926380938100