Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1282 127 2e-24 seq968 127 2e-24 seq1485 96.9 3e-15 >seq1282 Length=287270 Score = 127 bits (140), Expect = 2e-24 Identities = 306/455 (67%), Gaps = 10/455 (2%) Strand=Plus/Plus Query 50988 AAACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTTGCGTTC 51047 |||||| | |||||| || ||||||||| |||| || | ||||| | | | || Sbjct 32679 AAACTTTCTCTTACAACCGTTGTAGTTCATGTACCGTATCTTCCCAAACACACTCCTCTC 32738 Query 51048 TTTGAACGGCCTG-TCGTGCACACCGCAAATTGACCACATACAACCCACATAATTGTTAG 51106 | || | || ||||| || || || || |||||||| |||||||| || ||| | Sbjct 32739 CCTCCACC-CTTGATCGTGAACCCCACATATCGACCACATGCAACCCACGAAACCGTTCG 32797 Query 51107 GATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGCCATGT 51166 ||| ||| || | | |||||||||| | | | || | ||||||| | Sbjct 32798 CGTCGTTACCGTCTAGCGAGAAATGATCGTTGAAGTACAGCGCCTCCGCCAATGCTTCTT 32857 Query 51167 CTGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACCGTGCA 51226 | | ||| | ||||| || | |||||||| ||||||||||| | ||| | ||||||| Sbjct 32858 CCGGACTGGCTGTCCACTCTAGGATTTTCTTAGCCCAGTACATCCTCATAAACCCGTGCA 32917 Query 51227 TCTTGCCCTCGCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGTGAGTTTGGC 51286 |||| || || | |||||| |||||| | |||||||| | |||||| |||| Sbjct 32918 TCTTCCCTTCACGCACAAGCTGTTTTTGAGCGGCGTTCCACAGATTGTCGTGGGTTTT-- 32975 Query 51287 AACTTGCCAG---CT-CTGTCAAATTGTAAATGTATGAGCGATGATCGTATTTGTGTTGC 51342 | | | |||| || ||||| | ||| | ||| || | |||| | ||||| | Sbjct 32976 AGCCT-CCAGGAACTGCTGTCGCGT-GTAGACGTACTCCCGTTTGTCGTCTCTGTGTGCC 33033 Query 51343 TCGATCGTTTCTTGAGCCCATTGTGGTGCGCCTTCAACACAGTCGTAGCGGTCGTTGTAG 51402 | | || || || ||||| | || ||| || | | || ||||||| | |||||| Sbjct 33034 TTCAGTGTCTCCTGTGCCCAGTTTGCTGCCCCCTTTATACTGTCGTAGTTCTGATTGTAG 33093 Query 51403 AAACAAAAATTGTCGGCCAGTTCGCGGCGTACCAC 51437 |||||||| ||||||| ||| || || ||||| || Sbjct 33094 AAACAAAAGTTGTCGGACAGCTCACGCCGTACAAC 33128 >seq968 Length=289341 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||| || || |||| || ||||||| ||| | || Sbjct 46659 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATTACCCTCGAAGTTGAGCCATCC 46600 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || | |||||| | ||| |||||| ||||||||||| ||||| || || ||| Sbjct 46599 GATTCGATCGAGAACGTAAAGGCGAAAATCCAAGACAAAGAAGGAATTCCTCCCGATCAA 46540 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || || || ||||| || || || |||| |||||| || | |||||||| Sbjct 46539 CAACGTCTGATCTTCGCTGGCAAGCAGTTGGAGGATGGCCGCACTCTGAGTGATTACAAC 46480 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 ||||| || || || || || || || || || || || ||||||||| Sbjct 46479 ATTCAGAAGGAGTCAACTCTTCACTTGGTCCTGAGACTGAGAGGAGGA 46432 Score = 127 bits (140), Expect = 2e-24 Identities = 168/231 (73%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||||||||| || ||| | ||||| | ||||||||| | ||| Sbjct 47900 ATGCAAATCTTCGTCAAGACTTTGACAGGAAAAACAATCACTCTGGAAGTGGAGCCTTCT 47841 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||| | || || |||| |||| || | || || || ||||| || ||||| || Sbjct 47840 GACTCGATAGAAAATGTCA---AAGCTAAGATCCAA-GATAAGGAAGGAATCCCACCCGA 47785 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||||| | | || || |||||||| ||| | || || | | || | | ||||| Sbjct 47784 CCAACAGAGACTGATCTTCGCCGGCAAGCAACTTGAGGACGGCAGAACCCTTAGTGATTA 47725 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| ||||||||||||||||| || || || ||||| | || ||||||| Sbjct 47724 CAACATTCAAAAAGAATCCACCCTCCACTTGGTGCTCCGACTCCGAGGAGG 47674 Score = 100 bits (110), Expect = 2e-16 Identities = 110/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||||||||| || ||| | ||||| ||||||||||| | ||| Sbjct 48231 ATGCAAATCTTCGTCAAGACTTTGACAGGAAAAACTATCACTCTCGAAGTGGAGCCTTCT 48172 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| | |||||| | ||| | |||| ||| ||||| || || || ||||||||||| Sbjct 48171 GACTCGATCGAGAACGTCAAGGCCAAAATTCAG-GACAAGGAGGGAATCCCACCTGACCA 48113 Query 25118 ACAGCGGATTATTTTTGCCGGCAA 25141 |||| | | || ||||| || || Sbjct 48112 ACAGAGACTAATCTTTGCAGGTAA 48089 >seq1485 Length=353179 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || | || ||||| | ||||| | || || ||| | Sbjct 325072 ATGCAAATTTTTGTCAAAACCCTCACGGGTAAGACAATCACCCTAGAGGTCGAGCCTAGC 325131 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| | ||||| | ||| | || | ||| ||||||||||| || || || || || Sbjct 325132 GACTCAATCGAAAATGTTAAGGCTAAGATTCAA-GACAAAGAAGGTATCCCCCCAGATCA 325190 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| |||| || |||||||| || ||||||||| ||| || | | || ||||| Sbjct 325191 ACAGCGTCTTATCTTCGCCGGCAAGCAGCTAGAAGATGGTCGAACCCTTAGTGACTACAA 325250 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGG 25214 || || |||||| |||||| || || ||| | ||| Sbjct 325251 CATCCAGAAAGAAAGCACGCTGCACTTGGTGTTGAGG 325287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433301065956500