Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq968 125 6e-24 seq1485 111 1e-19 seq1337 89.7 4e-13 seq802 82.4 6e-11 >seq968 Length=289341 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||||| || || ||||| ||||||| |||||||| | | Sbjct 47900 ATGCAAATCTTCGTCAAGACTTTGACAGGAAAAACAATCACTCTGGAAGTGGAGCCTTCT 47841 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || || ||||| || || ||||| ||||| || || |||||||| ||| Sbjct 47840 GACTCGATAGAAAATGTCAAAGCTAAGATCCAAGATAAGGAAGGAATCCCACCCGACCAA 47781 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || |||||||| || | ||||| | | ||| | ||||||||| Sbjct 47780 CAGAGACTGATCTTCGCCGGCAAGCAACTTGAGGACGGCAGAACCCTTAGTGATTACAAC 47721 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||||||||||||||| | || || || | ||| | || ||||| Sbjct 47720 ATTCAAAAAGAATCCACCCTCCACTTGGTGCTCCGACTCCGAGGAGG 47674 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || || | || || ||||| || | || Sbjct 46659 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATTACCCTCGAAGTTGAGCCATCC 46600 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| | | || | | || ||||| |||||||| || || ||||| ||||||||| Sbjct 46599 GATTCGATCGAGAACGTAAAGGCGAAAATCCAAGACAAAGAAGGAATTCCTCCCGATCAA 46540 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || || ||||| ||||| |||||| |||||| | ||||||||| Sbjct 46539 CAACGTCTGATCTTCGCTGGCAAGCAGTTGGAGGATGGCCGCACTCTGAGTGATTACAAC 46480 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || || | || || || || || || | ||||| Sbjct 46479 ATTCAGAAGGAGTCAACTCTTCACTTGGTCCTGAGACTGAGAGGAGG 46433 Score = 82.4 bits (90), Expect = 6e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | || || ||||| ||||||| ||||| || | | Sbjct 47672 ATGCAGATCTTTGTCAAGACTCTGACTGGAAAAACTATCACTCTGGAAGTTGAGCCTTCT 47613 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || | |||| |||||||| ||||||||||| || |||||||| ||| Sbjct 47612 GACTCGATCGAGAACGTCAAGGCCAAAATTCAGGACAAGGAGGGAATCCCACCCGACCAA 47553 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGA 22373 ||| | | || || ||||| |||||| | || || Sbjct 47552 CAAAGATTGATCTTCGCCGGTAAACAGCTGGAAGA 47518 >seq1485 Length=353179 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||||||||| ||||| | || ||||| || |||| || || || || | | Sbjct 325071 GATGCAAATTTTTGTCAAAACCCTCACGGGTAAGACAATCACCCTAGAGGTCGAGCCTAG 325130 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| | | || || | || || ||||||||||| || ||||| || || ||||| Sbjct 325131 CGACTCAATCGAAAATGTTAAGGCTAAGATTCAAGACAAAGAAGGTATCCCCCCAGATCA 325190 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||| |||||||| || |||||||| ||| |||| ||| || ||| | || ||||| Sbjct 325191 ACAGCGTCTTATCTTCGCCGGCAAGCAGCTAGAAGATGGTCGAACCCTTAGTGACTACAA 325250 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTG 22431 ||| || |||||| ||| | || || || ||| Sbjct 325251 CATCCAGAAAGAAAGCACGCTGCACTTGGTGTTG 325284 >seq1337 Length=66774 Score = 89.7 bits (98), Expect = 4e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 22321 GGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGC 22380 |||||||| ||||| |||||||||||||| || || || || ||||| || ||| || Sbjct 40960 GGTATTCCTCCCGACCAACAACGTCTTATTTTCGCTGGGAAGCAGTTGGAAGATGGTCGA 41019 Query 22381 ACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGC 22440 || | ||| ||||||||||| ||||| ||| | ||| | ||| | ||| | ||| Sbjct 41020 ACTCTTAGCGACTACAACATTCAGAAAGAGAGTACCCTTCATCTTGTTCTTCGACTTCGC 41079 Query 22441 GGAGGTTTTCCATTTTAAAATT 22462 |||||||| ||||| |||| Sbjct 41080 GGAGGTTTGATGTTTTATAATT 41101 >seq802 Length=67242 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 22297 AAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCC 22356 |||||| | || || || || || || ||||| || || |||||||| ||||| || ||| Sbjct 46702 AAACAATACATACAGGATAAAGAAGGCATTCCTCCTGACCAACAACGGCTTATCTTCGCC 46643 Query 22357 GGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGA 22409 ||||||||||| || ||| || | || | || || |||||||| || || || Sbjct 46642 GGCAAACAGTTGGAAGATTACAGGACGTTGTCAGACTACAACATACAGAAGGA 46590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419701911281500