Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1541 98.7 2e-15 seq2026 96.9 7e-15 seq3588 95.1 2e-14 seq1998 95.1 2e-14 >seq1541 Length=1222598 Score = 98.7 bits (108), Expect = 2e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||| Sbjct 538479 GCCCGGTTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGCGGGTTCGAGC 538420 Query 142564 CCCACATCGGGCAGAAGTCGCCGTCTTTTGAT 142595 ||| |||||||| | | ||| |||||| || Sbjct 538419 CCCGCATCGGGCTGTTGGCGCAATCTTTTAAT 538388 >seq2026 Length=206770 Score = 96.9 bits (106), Expect = 7e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||| Sbjct 82371 AGCCCGGTTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGCGGGTTCGAG 82430 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 82431 CCCCGCATCGGGC 82443 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||| Sbjct 81507 GCCCGGTTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGCGGGTTCGAGC 81566 Query 142564 CCCACATCGGGCAGA 142578 ||| |||||||| || Sbjct 81567 CCCGCATCGGGCTGA 81581 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||| Sbjct 82057 GCCCGGTTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGCGGGTTCGAGC 82116 Query 142564 CCCACATCGGGCAGA 142578 ||| |||||||| || Sbjct 82117 CCCGCATCGGGCTGA 82131 >seq3588 Length=404268 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||| Sbjct 183100 GCCCGGTTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGCGGGTTCGAGC 183159 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 183160 CCCGCATCGGGC 183171 >seq1998 Length=276169 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||| Sbjct 174034 GCCCGGTTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGCGGGTTCGAGC 174093 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 174094 CCCGCATCGGGC 174105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027769637289100