Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq968 161 2e-34 seq1485 145 1e-29 seq1337 91.5 3e-13 seq387 84.2 4e-11 >seq968 Length=289341 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | |||||||| || ||||| |||||||| ||||| ||||| Sbjct 47674 CCTCCTCGGAGTCGGAGCACCAAGTGGAGGGTGGATTCTTTTTGAATGTTGTAATCACTA 47733 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || || || || || | ||||| |||||||| || ||||| |||||||||||||| Sbjct 47734 AGGGTTCTGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAGTCTCTGTTGGTCGGGTGGG 47793 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| ||||| ||||| || ||||| || || | ||| | | || ||| Sbjct 47794 ATTCCTTCCTTATCTTGGATCTTAGCTTTGACATTTTCTATCGAGTCAGAAGGCTCCACT 47853 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||| |||||||| || | ||||||||||| || ||||| Sbjct 47854 TCCAGAGTGATTGTTTTTCCTGTCAAAGTCTTGACGAAGATTTGCAT 47900 Score = 156 bits (172), Expect = 8e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| | || | || || | || || || ||||| |||||||| || || || Sbjct 47444 TTCCTCCTCTCAGCCTTAAGACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAGTCAC 47503 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 || || | || ||||| | ||| || |||||||| || | ||||||||||||||||| Sbjct 47504 TCAGAGTTCGACCGTCTTCCAGCTGTTTACCGGCGAAGATCAATCTTTGTTGGTCGGGTG 47563 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | || || |||||||| ||||| || ||||||||| |||||| | ||| | | || | Sbjct 47564 GGATTCCCTCCTTGTCCTGAATTTTGGCCTTGACGTTCTCGATCGAGTCAGAAGGCTCAA 47623 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| ||||| |||||||| || || |||||||| || |||||||| Sbjct 47624 CTTCCAGAGTGATAGTTTTTCCAGTCAGAGTCTTGACAAAGATCTGCAT 47672 Score = 129 bits (142), Expect = 1e-24 Identities = 113/141 (80%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || || ||||| ||||||||||| ||||| |||||||| ||||| ||||||| | Sbjct 49215 CCTGCAAAGATCAGTCTCTGTTGGTCGGGAGGAATTCCTTCCTTATCTTGGATCTTTGAC 49274 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || ||| ||| || | ||| | || ||| || || ||||| ||||| |||||||| || Sbjct 49275 TTAACGTTCTCAATTGAGTCCGATGGTTCGACCTCTAAGGTTATGGTCTTTCCCGTCAGA 49334 Query 68442 GTCTTGACGAATATCTGCATT 68462 ||||| ||||| ||||||||| Sbjct 49335 GTCTTAACGAAAATCTGCATT 49355 Score = 109 bits (120), Expect = 1e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || || || || ||||| |||||||| ||||| || || |||||||| ||||| || Sbjct 48089 TTACCTGCAAAGATTAGTCTCTGTTGGTCAGGTGGGATTCCCTCCTTGTCCTGAATTTTG 48148 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 ||||||||| |||||| | ||| | | || ||||| | ||||| |||||||| || Sbjct 48149 GCCTTGACGTTCTCGATCGAGTCAGAAGGCTCCACTTCGAGAGTGATAGTTTTTCCTGTC 48208 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 | ||||||||||| || ||||| Sbjct 48209 AAAGTCTTGACGAAGATTTGCAT 48231 Score = 87.8 bits (96), Expect = 3e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 ||||| || || || | |||||||| || || || || || ||||| || ||||| || Sbjct 47305 CCGGCAAAGATCAGACGCTGTTGGTCAGGGGGGATTCCCTCTTTGTCCTGGATCTTGGCT 47364 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || || || | ||| | | || || |||||||||||||| || || ||||| Sbjct 47365 TTCACATTTTCAATAGAGTCAGACGGCTCAACCTCCAAGGTGATGGTCTTGCCAGTGAGA 47424 Query 68442 GTCTTGACGAATATCTGCATT 68462 || |||||||| ||||||||| Sbjct 47425 GTTTTGACGAAGATCTGCATT 47445 >seq1485 Length=353179 Score = 145 bits (160), Expect = 1e-29 Identities = 162/214 (76%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 ||| |||||||| |||||| ||||| |||||||| || || || || | ||||| Sbjct 325284 CAACACCAAGTGCAGCGTGCTTTCTTTCTGGATGTTGTAGTCACTAAGGGTTCGACCATC 325225 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 ||||| |||||| |||||||| || || | ||||| || || || || ||||| ||||| Sbjct 325224 TTCTAGCTGCTTGCCGGCGAAGATAAGACGCTGTTGATCTGGGGGGATACCTTCTTTGTC 325165 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGG 68427 ||||||||| ||||| || ||||| | ||| ||| | || || || | |||||| | Sbjct 325164 TTGAATCTTAGCCTTAACATTTTCGATTGAGTC-GCTAGGCTCGACCTCTAGGGTGATTG 325106 Query 68428 TTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || ||||||||||| ||||| || || ||||| Sbjct 325105 TCTTACCCGTGAGGGTTTTGACAAAAATTTGCAT 325072 >seq1337 Length=66774 Score = 91.5 bits (100), Expect = 3e-13 Identities = 98/127 (77%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||||||||||| || || | |||| || || || |||||| || ||||| || ||| Sbjct 41084 CCTCCGCGAAGTCG-AAGAACAAGATGAAGGGTACTCTCTTTCTGAATGTTGTAGTCGCT 41026 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 || || | |||||||| ||||||||||| ||||| || || | |||||||||||| || Sbjct 41025 AAGAGTTCGACCATCTTCCAACTGCTTCCCAGCGAAAATAAGACGTTGTTGGTCGGGAGG 40966 Query 68354 AATGCCT 68360 ||| ||| Sbjct 40965 AATACCT 40959 >seq387 Length=79051 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 || ||||||||||| ||||| ||||| || ||||| | ||||| | ||| || || Sbjct 24462 CCCTCCTTGTCTTGGATCTTAGCCTTTACATTTTCGATAGAGTCTGAAGGTTCAACCTCG 24403 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||||||| || ||||| |||||||| ||||| |||||||| Sbjct 24402 AGTGTGATGGTCTTACCCGTTAGGGTCTTCACGAAAATCTGCAT 24359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921563646572000