Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1485 109 5e-19 seq968 96.9 3e-15 seq802 93.3 4e-14 seq1337 86.0 5e-12 >seq1485 Length=353179 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 114168 CTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAA 114227 ||||| || || || | ||| |||||| || |||||||| || || | || ||| | Sbjct 325286 CTCAACACCAAGTGCAGCGTGCTTTCTTTCTGGATGTTGTAGTCACTAAGGGTTCGACCA 325227 Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287 ||||| || || || || ||| |||| ||||||||||| || || || || ||||||||| Sbjct 325226 TCTTCTAGCTGCTTGCCGGCGAAGATAAGACGCTGTTGATCTGGGGGGATACCTTCTTTG 325167 Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347 || |||||| || | | ||| | | |||| | | ||||| || | ||| | Sbjct 325166 TCTTGAATCTTAGCCTTAACATTTTCGATTGAGTCGCTAGGCTCGACCTCTAGGGTGATT 325107 Query 114348 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || || || || ||||| |||||||| ||||| Sbjct 325106 GTCTTACCCGTGAGGGTTTTGACAAAAATTTGCAT 325072 >seq968 Length=289341 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224 ||||||| || || || | || || || || |||||||||||||| |||| ||| || Sbjct 46442 AGTCTCAGGACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAATCACTCAGAGTGCGG 46501 Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 ||| || | || || |||||| |||| ||||| ||||| || |||||||| |||||| Sbjct 46502 CCATCCTCCAACTGCTTGCCAGCGAAGATCAGACGTTGTTGATCGGGAGGAATTCCTTCT 46561 Query 114285 TTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTC 114344 ||||| || || |||| | || | | |||| | || || || | ||| Sbjct 46562 TTGTCTTGGATTTTCGCCTTTACGTTCTCGATCGAATCGGATGGCTCAACTTCGAGGGTA 46621 Query 114345 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || ||||| |||| || || || || |||||||| Sbjct 46622 ATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 46659 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || || |||| | || || || | || ||||||||||||||||||||||| Sbjct 47671 ATGCCTCCTCGGAGTCGGAGCACCAAGTGGAGGGTGGATTCTTTTTGAATGTTGTAATCA 47730 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || | || | || |||||||| || || ||| |||| || | ||||||||| || Sbjct 47731 CTAAGGGTTCTGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAGTCTCTGTTGGTCGGGT 47790 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| || || ||||| ||| | | ||| | | ||| | | || Sbjct 47791 GGGATTCCTTCCTTATCTTGGATCTTAGCTTTGACATTTTCTATCGAGTCAGAAGGCTCC 47850 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || |||| || | ||||| || |||| ||| || || || || |||||| || Sbjct 47851 ACTTCCAGAGTGATTGTTTTTCCTGTCAAAGTCTTGACGAAGATTTGCATGCCT 47904 >seq802 Length=67242 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| || | |||||||||||| | |||| ||| || || || |||||||| || Sbjct 46553 ACCACCTCTTAGTCTCAAAACAAGGTGTAAAGTACTCTCCTTCTGTATGTTGTAGTCTGA 46612 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || || | ||||||| | ||||| || ||| |||| || || |||||||| ||||| Sbjct 46613 CAACGTCCTGTAATCTTCCAACTGTTTGCCGGCGAAGATAAGCCGTTGTTGGTCAGGAGG 46672 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 |||||||||||| || || | |||||| || | | || || | | ||| Sbjct 46673 AATGCCTTCTTTATCCTGTATGTATTGTTTAAGTTCACCTACTGTCATGCAGCCTTCAGA 46732 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAA 114375 ||||| | || |||||||| || || ||||| ||| ||| Sbjct 46733 GTCCAATGAAACAGTTTTGCCAGTTAGTGTTTTCACATAAA 46773 >seq1337 Length=66774 Score = 86.0 bits (94), Expect = 5e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| || || |||| | ||| | ||| | ||| ||||| ||||||||||| ||||| Sbjct 41085 ACCTCCGCGAAGTCGAAGAACAAGATGAAGGGTACTCTCTTTCTGAATGTTGTAGTCGCT 41026 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | ||| ||| |||||| | || || |||||| | || ||||| |||||||| ||||| Sbjct 41025 AAGAGTTCGACCATCTTCCAACTGCTTCCCAGCGAAAATAAGACGTTGTTGGTCGGGAGG 40966 Query 114275 AATGCCT 114281 ||| ||| Sbjct 40965 AATACCT 40959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420108286021200