Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq387 91.5 1e-13 seq968 82.4 6e-11 >seq387 Length=79051 Score = 91.5 bits (100), Expect = 1e-13 Identities = 92/117 (79%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 33898 AAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCT 33957 |||||||||| ||| | || |||||||||||| || ||||| ||||| |||||||| || Sbjct 24719 AAACCTCCTCGCAGTCTCAACACCAGATGAAGGGTACTCTCTTTCTGGATGTTGTAGTC- 24661 Query 33958 GCCAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || | || | | |||| ||||| || || || ||||| ||||| ||||| ||||| Sbjct 24660 GCTCAGGGTCCTCCCGTCTTCCAACTGTTTACCCGCAAAAATCAGACGCTGTTGATC 24604 >seq968 Length=289341 Score = 82.4 bits (90), Expect = 6e-11 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||||||| | ||| |||| ||||| || ||||||||||||||||||||| | Sbjct 46433 CCTCCTCTCAGTCTCAGGACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAATCACTC 46492 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | | || || | || ||||| |||||||| || || ||||| || || ||||| Sbjct 46493 AGAGTG-CGGCCATCCTCCAACTGCTTGCCAGCGAAGATCAGACGTTGTTGATC 46545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397037720090200