Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1485 129 1e-24 seq968 127 5e-24 seq387 84.2 5e-11 >seq1485 Length=353179 Score = 129 bits (142), Expect = 1e-24 Identities = 150/201 (75%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 288276 CGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCC 288335 |||||||||||| ||||| || ||||| || || || || ||||||| || || || Sbjct 325269 CGTGCTTTCTTTCTGGATGTTGTAGTCACTAAGGGTTCGACCATCTTCTAGCTGCTTGCC 325210 Query 288336 TGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGC 288392 |||||||| ||||||||||| |||| ||||| |||||||| || || || || || Sbjct 325209 GGCGAAGATAAGACGCTGTTG---ATCTGGGGGGATACCTTCTTTGTCTTGAATCTTAGC 325153 Query 288393 TTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAG 288452 || || ||||| || || ||||| | || || || || ||||| ||||| || || || Sbjct 325152 CTTAACATTTTCGATTGAGTCGCTAGGCTCGACCTCTAGGGTGATTGTCTTACCCGTGAG 325093 Query 288453 AGTCTTGACGAATATCTGCAT 288473 || ||||| || || ||||| Sbjct 325092 GGTTTTGACAAAAATTTGCAT 325072 >seq968 Length=289341 Score = 127 bits (140), Expect = 5e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 ||||| || | ||||| || || | |||| || || || || || || || || Sbjct 46430 TGTCCTCCTCTCAGTCTCAGGACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAATCA 46489 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 || ||||| || || || || || || || |||||||||||||| |||||| Sbjct 46490 CTCAGAGTGCGGCCATCCTCCAACTGCTTGCCAGCGAAGATCAGACGTTGTTGATCGGGA 46549 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||||||||| || ||||||||||| || ||||| || || |||||| | || Sbjct 46550 GGAATTCCTTCTTTGTCTTGGATTTTCGCCTTTACGTTCTCGATCGAATCGGATGGCTCA 46609 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||| || || ||||| || |||| ||||| ||||| |||||||| Sbjct 46610 ACTTCGAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 46659 Score = 127 bits (140), Expect = 5e-24 Identities = 168/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || ||||||| || || | || | ||| ||||||||| || || || | Sbjct 47670 CATG-CCTCCTCGGAGTCGGAGCACCAAGTGGAGGGTGGATTCTTTTTGAATGTTGTAAT 47728 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || || | ||||| || | ||| || || ||||||||||| | |||||| Sbjct 47729 CACTAAGGGTTCTGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAGTCTCTGTTGGTCGG 47788 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 |||||||||||| ||||| ||||| || ||||| || |||||||| || || | | Sbjct 47789 GTGGGATTCCTTCCTTATCTTGGATCTTAGCTTTGACATTTTCTATCGAGTCAGAAGGCT 47848 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||| || ||||| || || || |||| |||||||||||| || ||||| Sbjct 47849 CCACTTCCAGAGTGATTGTTTTTCCTGTCAAAGTCTTGACGAAGATTTGCAT 47900 Score = 122 bits (134), Expect = 2e-22 Identities = 156/214 (73%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 288260 TAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGT 288319 |||| |||||||| | || || ||||||||||| ||||| || || || |||| Sbjct 47460 TAAG-ACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAGTCACTCAGAGTTCGACCGT 47518 Query 288320 CTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTAT 288379 |||| | ||||| || |||||||||| | ||||| ||||||||| || || | Sbjct 47519 CTTCCAGCTGTTTACCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATTCCCTCCTTGT 47578 Query 288380 CCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCG 288439 |||| ||||| || || ||||| || || || || | || ||||| || ||||| | Sbjct 47579 CCTGAATTTTGGCCTTGACGTTCTCGATCGAGTCAGAAGGCTCAACTTCCAGAGTGATAG 47638 Query 288440 TCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || |||||||||||||| || |||||||| Sbjct 47639 TTTTTCCAGTCAGAGTCTTGACAAAGATCTGCAT 47672 Score = 114 bits (126), Expect = 3e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || ||||||||||||||||| | |||||||| ||||| || ||||||||| Sbjct 46915 TTACCGGCAAAGATCAGACGCTGTTGGTCAGGGGGGATTCCCTCTTTGTCTTGGATTTTC 46974 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || || ||||| || || |||||| | || |||||||| || || ||||| || ||| Sbjct 46975 GCCTTTACGTTCTCGATCGAATCGGATGGCTCAACTTCGAGGGTAATGGTCTTGCCTGTC 47034 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 | || |||||||| |||||||| Sbjct 47035 AAGGTTTTGACGAAGATCTGCAT 47057 Score = 114 bits (126), Expect = 3e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || ||||||||||||||||| | |||||||| ||||| |||||||| || ||| Sbjct 47305 CCGGCAAAGATCAGACGCTGTTGGTCAGGGGGGATTCCCTCTTTGTCCTGGATCTTGGCT 47364 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||| ||||| ||||| || || || || || | ||||| ||||| || || ||| Sbjct 47365 TTCACATTTTCAATAGAGTCAGACGGCTCAACCTCCAAGGTGATGGTCTTGCCAGTGAGA 47424 Query 288454 GTCTTGACGAATATCTGCATT 288474 || |||||||| ||||||||| Sbjct 47425 GTTTTGACGAAGATCTGCATT 47445 Score = 114 bits (126), Expect = 3e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || || |||||||||||||| | ||||||||||||||||| ||||| || Sbjct 48828 TTACCAGCAAAAATCAGACGCTGTTGGTCAGGGGGGATTCCTTCTTTATCTTGGATCTTA 48887 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 ||||| ||||| || || |||||| | || |||||||| || || ||||| || ||| Sbjct 48888 GCTTTGACGTTCTCGATCGAATCGGATGGCTCAACTTCGAGGGTAATGGTCTTGCCAGTC 48947 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 | ||||| ||||| |||||||| Sbjct 48948 AAGGTCTTCACGAAGATCTGCAT 48970 Score = 96.9 bits (106), Expect = 8e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || ||||| ||||| || | |||||| | ||||||||| || || ||||| ||||| Sbjct 48089 TTACCTGCAAAGATTAGTCTCTGTTGGTCAGGTGGGATTCCCTCCTTGTCCTGAATTTTG 48148 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || || ||||| || || || || | || |||||||| ||||| || || || ||| Sbjct 48149 GCCTTGACGTTCTCGATCGAGTCAGAAGGCTCCACTTCGAGAGTGATAGTTTTTCCTGTC 48208 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 | |||||||||||| || ||||| Sbjct 48209 AAAGTCTTGACGAAGATTTGCAT 48231 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 ||||| |||||||| | |||||| || |||||||| ||||| ||||| || | Sbjct 49215 CCTGCAAAGATCAGTCTCTGTTGGTCGGGAGGAATTCCTTCCTTATCTTGGATCTTTGAC 49274 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || ||||| || || || || | ||| || || | || || ||||| || |||||| Sbjct 49275 TTAACGTTCTCAATTGAGTCCGATGGTTCGACCTCTAAGGTTATGGTCTTTCCCGTCAGA 49334 Query 288454 GTCTTGACGAATATCTGCATT 288474 ||||| ||||| ||||||||| Sbjct 49335 GTCTTAACGAAAATCTGCATT 49355 >seq387 Length=79051 Score = 84.2 bits (92), Expect = 5e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || ||||| | || ||||||| || || ||||| ||||| || |||||| Sbjct 24716 CCTCCTCGCAGTCTCAACACCAGATGAAGGGTACTCTCTTTCTGGATGTTGTAGTCGCTC 24657 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | |||||||| || ||||| || || || ||||||||||||||| | ||| Sbjct 24656 AGGGTCCTCCCGTCTTCCAACTGTTTACCCGCAAAAATCAGACGCTGTTGATCAGGTGGA 24597 Query 288367 ATTCCT 288372 |||||| Sbjct 24596 ATTCCT 24591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179577316957800