Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq2340 96.9 4e-15 seq3689 95.1 1e-14 seq1985 95.1 1e-14 seq806 95.1 1e-14 seq321 95.1 1e-14 seq968 86.0 7e-12 >seq2340 Length=352566 Score = 96.9 bits (106), Expect = 4e-15 Identities = 75/89 (84%), Gaps = 3/89 (3%) Strand=Plus/Minus Query 56990 CGTTTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGC 57049 |||| ||||||| |||| || || | ||||||||||||||| |||||||||||||| Sbjct 268119 CGTTATTGAAAAAG---CTCCCCGACAGGGAATCGAACCCTGGTCGCCCGCGTGACAGGC 268063 Query 57050 GGACATACTCACCACTATACTACCGAGGA 57078 || |||||||||||||||||| |||||| Sbjct 268062 GGGAATACTCACCACTATACTATCGAGGA 268034 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || || | ||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 267836 CTCCCCGACAGGGAATCGAACCCTGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 267895 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 267896 TACTATCGAGGA 267907 >seq3689 Length=268539 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || || | ||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 31285 CTCCCCGACAGGGAATCGAACCCTGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 31226 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 31225 TACTATCGAGGA 31214 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || || | ||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 31842 CTCCCCGACAGGGAATCGAACCCTGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 31783 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 31782 TACTATCGAGGA 31771 >seq1985 Length=140083 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || || | ||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 18152 CTCCCCGACAGGGAATCGAACCCTGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 18211 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 18212 TACTATCGAGGA 18223 >seq806 Length=119131 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || || | ||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 89988 CTCCCCGACAGGGAATCGAACCCTGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 90047 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 90048 TACTATCGAGGA 90059 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || || | ||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 90270 CTCCCCGACAGGGAATCGAACCCTGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 90329 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 90330 TACTATCGAGGA 90341 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || || | ||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 90704 CTCCCCGACAGGGAATCGAACCCTGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 90763 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 90764 TACTATCGAGGA 90775 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || || | ||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 90964 CTCCCCGACAGGGAATCGAACCCTGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 90905 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 90904 TACTATCGAGGA 90893 >seq321 Length=199883 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || || | ||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 196300 CTCCCCGACAGGGAATCGAACCCTGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 196241 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 196240 TACTATCGAGGA 196229 >seq968 Length=289341 Score = 86.0 bits (94), Expect = 7e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||||| | || | |||||| || | ||| || |||||||| ||||||||| Sbjct 47674 CCTCCTCGGAGTCGGAGCACCAAGTGGAGGGTGGATTCTTTTTGAATGTTGTAATCACTA 47733 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || | |||| || || ||||| || ||||| || |||| ||| ||||||| ||| Sbjct 47734 AGGGTTCTGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAGTCTCTGTTGGTCGGGTGGG 47793 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | ||||| || ||| || ||||| | | | || ||| | ||||| Sbjct 47794 ATTCCTTCCTTATCTTGGATCTTAGCTTTGACATTTTCTATCGAGTCAGAAGGCTCCACT 47853 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||| ||||| || || | ||||| || ||||||||||| Sbjct 47854 TCCAGAGTGATTGTTTTTCCTGTCAAAGTCTTGACGAAGATTTGCAT 47900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543178170184000