Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq968 116 4e-21 seq1485 89.7 5e-13 >seq968 Length=289341 Score = 116 bits (128), Expect = 4e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||||||||||||||||||||| | ||| | |||| ||||| ||||||||| Sbjct 47704 GTGGATTCTTTTTGAATGTTGTAATCACTAAGGGTTCTGCCGTCCTCAAGTTGCTTGCCG 47763 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || || | ||| |||||||| || |||||||| || ||||| | | || ||||| Sbjct 47764 GCGAAGATCAGTCTCTGTTGGTCGGGTGGGATTCCTTCCTTATCTTGGA-TCTTAGCTTT 47822 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| || | | ||| | |||||||| | ||| | || || || |||||||| Sbjct 47823 GACATTTTCTATCGAGTCAGAAGGCTCCACTTCCAGAGTGATTGTTTTTCCTGTCAAAGT 47882 Query 64426 TTTTACGAAAATTTGCAT 64443 || ||||| |||||||| Sbjct 47883 CTTGACGAAGATTTGCAT 47900 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || | || ||| || || | |||| || || || || |||||||||||||| Sbjct 46433 CCTCCTCTCAGTCTCAGGACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAATCACTC 46492 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || | ||||||||| || | || || || || || ||||||||| Sbjct 46493 AGAGTGCGGCCATCCTCCAACTGCTTGCCAGCGAAGATCAGACGTTGTTGATCGGGAGGA 46552 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 ||||||||||| ||||| ||||| |||||| ||| | | ||| | || ||| Sbjct 46553 ATTCCTTCTTTGTCTTGGATTTTCGCCTTTACGTTCTCGATCGAATCGGATGGCTCAACT 46612 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||| ||||| || || ||||| || ||||| Sbjct 46613 TCGAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 46659 Score = 86.0 bits (94), Expect = 6e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 || ||| | || || | ||| |||||||||||||||||||| || ||||| || ||| | Sbjct 49215 CCTGCAAAGATCAGTCTCTGTTGGTCGGGAGGAATTCCTTCCTTATCTTGGATCTTTGAC 49274 Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 || || ||| | || || | || || |||| |||| |||||| || |||| | Sbjct 49275 TTAACGTTCTCAATTGAGTCCGATGGTTCGACCTCTAAGGTTATGGTCTTTCCCGTCAGA 49334 Query 64424 GTTTTTACGAAAATTTGCATTT 64445 || || |||||||| ||||||| Sbjct 49335 GTCTTAACGAAAATCTGCATTT 49356 >seq1485 Length=353179 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 64252 TTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATA 64311 |||||| || |||||||| || | ||| || | ||||| |||||||||||||| | Sbjct 325263 TTCTTTCTGGATGTTGTAGTCACTAAGGGTTCGACCATCTTCTAGCTGCTTGCCGGCGAA 325204 Query 64312 AATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAAC 64371 || || ||||| || || || || || |||||||| ||||| || || ||| ||| Sbjct 325203 GATAAGACGCTGTTGATCTGGGGGGATACCTTCTTTGTCTTGAATCTTAGCCTTAACATT 325144 Query 64372 CTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTAC 64431 || | || || | | || || |||| || | ||||| || || | ||||| || Sbjct 325143 TTCGATTGAGTCGCTAGGCTCGACCTCTAGGGTGATTGTCTTACCCGTGAGGGTTTTGAC 325084 Query 64432 GAAAATTTGCAT 64443 ||||||||||| Sbjct 325083 AAAAATTTGCAT 325072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499612947644000