Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19]
5,100 sequences; 155,865,547 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq968 98.7 1e-15
seq1485 91.5 1e-13
>seq968
Length=289341
Score = 98.7 bits (108), Expect = 1e-15
Identities = 144/201 (72%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478
||||||||||||| || |||||||| |||| ||| || ||| || || ||||||||||
Sbjct 47477 TTGACTCCTTTTGGATATTGTAGTCACTCAGAGTTCGACCGTCTTCCAGCTGTTTACCGG 47536
Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTT 138537
|||| | | |||||||| || || || || || ||||| ||| |||| | ||
Sbjct 47537 CGAAGATCAATCTTTGTTGGTCGGGTGGGATTCCCTCCTTGTC-CTGAATTTTGGCCTTG 47595
Query 138538 AATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597
| | || | | ||| | | ||| || || | || | ||||| |||||||||||
Sbjct 47596 ACGTTCTCGATCGAGTCAGAAGGCTCAACTTCCAGAGTGATAGTTTTTCCAGTCAGAGTC 47655
Query 138598 TTTACAAAAATCTGCATGGCT 138618
|| ||||| ||||||||| ||
Sbjct 47656 TTGACAAAGATCTGCATGCCT 47676
Score = 93.3 bits (102), Expect = 4e-14
Identities = 138/196 (70%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478
|||||||||| ||||||||||| || |||| ||| || ||||| | || || || |
Sbjct 46464 TTGACTCCTTCTGAATGTTGTAATCACTCAGAGTGCGGCCATCCTCCAACTGCTTGCCAG 46523
Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538
|||| ||||| ||||| || ||||| || ||||||||||| |||||| ||||
Sbjct 46524 CGAAGATCAGACGTTGTTGATCGGGAGGAATTCCTTCTTTGTCTTGGATTTTCGCCTTTA 46583
Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
| || | | |||| | ||| || |||| || | || || ||||||| || |
Sbjct 46584 CGTTCTCGATCGAATCGGATGGCTCAACTTCGAGGGTAATGGTCTTGCCAGTCAAGGTCT 46643
Query 138599 TTACAAAAATCTGCAT 138614
| || || ||||||||
Sbjct 46644 TCACGAAGATCTGCAT 46659
>seq1485
Length=353179
Score = 91.5 bits (100), Expect = 1e-13
Identities = 137/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 138424 TCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAG 138483
|| || || ||||||||||| || | || || || || || || || |||| ||
Sbjct 325262 TCTTTCTGGATGTTGTAGTCACTAAGGGTTCGACCATCTTCTAGCTGCTTGCCGGCGAAG 325203
Query 138484 ATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTG 138542
|| ||||||||||| || || || |||||||||||||| ||| | || | |||| |
Sbjct 325202 ATAAGACGCTGTTGATCTGGGGGGATACCTTCTTTGTC-TTGAATCTTAGCCTTAACATT 325144
Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602
||| | | |||| | | ||| ||||| | || | || ||||| || || ||||| ||
Sbjct 325143 TTCGATTGAGTCGCTAGGCTCGACCTCTAGGGTGATTGTCTTACCCGTGAGGGTTTTGAC 325084
Query 138603 AAAAATCTGCAT 138614
|||||| |||||
Sbjct 325083 AAAAATTTGCAT 325072
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496230763272000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |