Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq968 98.7 1e-15 seq1485 91.5 1e-13 >seq968 Length=289341 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 ||||||||||||| || |||||||| |||| ||| || ||| || || |||||||||| Sbjct 47477 TTGACTCCTTTTGGATATTGTAGTCACTCAGAGTTCGACCGTCTTCCAGCTGTTTACCGG 47536 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTT 138537 |||| | | |||||||| || || || || || ||||| ||| |||| | || Sbjct 47537 CGAAGATCAATCTTTGTTGGTCGGGTGGGATTCCCTCCTTGTC-CTGAATTTTGGCCTTG 47595 Query 138538 AATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 | | || | | ||| | | ||| || || | || | ||||| ||||||||||| Sbjct 47596 ACGTTCTCGATCGAGTCAGAAGGCTCAACTTCCAGAGTGATAGTTTTTCCAGTCAGAGTC 47655 Query 138598 TTTACAAAAATCTGCATGGCT 138618 || ||||| ||||||||| || Sbjct 47656 TTGACAAAGATCTGCATGCCT 47676 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||| ||||||||||| || |||| ||| || ||||| | || || || | Sbjct 46464 TTGACTCCTTCTGAATGTTGTAATCACTCAGAGTGCGGCCATCCTCCAACTGCTTGCCAG 46523 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 |||| ||||| ||||| || ||||| || ||||||||||| |||||| |||| Sbjct 46524 CGAAGATCAGACGTTGTTGATCGGGAGGAATTCCTTCTTTGTCTTGGATTTTCGCCTTTA 46583 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | || | | |||| | ||| || |||| || | || || ||||||| || | Sbjct 46584 CGTTCTCGATCGAATCGGATGGCTCAACTTCGAGGGTAATGGTCTTGCCAGTCAAGGTCT 46643 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 46644 TCACGAAGATCTGCAT 46659 >seq1485 Length=353179 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 138424 TCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAG 138483 || || || ||||||||||| || | || || || || || || || |||| || Sbjct 325262 TCTTTCTGGATGTTGTAGTCACTAAGGGTTCGACCATCTTCTAGCTGCTTGCCGGCGAAG 325203 Query 138484 ATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTG 138542 || ||||||||||| || || || |||||||||||||| ||| | || | |||| | Sbjct 325202 ATAAGACGCTGTTGATCTGGGGGGATACCTTCTTTGTC-TTGAATCTTAGCCTTAACATT 325144 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 ||| | | |||| | | ||| ||||| | || | || ||||| || || ||||| || Sbjct 325143 TTCGATTGAGTCGCTAGGCTCGACCTCTAGGGTGATTGTCTTACCCGTGAGGGTTTTGAC 325084 Query 138603 AAAAATCTGCAT 138614 |||||| ||||| Sbjct 325083 AAAAATTTGCAT 325072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496230763272000