Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq968 120 2e-22 seq1485 102 6e-17 >seq968 Length=289341 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 |||| ||||| | || | || || || ||||| || |||||||| ||||||||||| | Sbjct 47672 TGCCTCCTCGGAGTCGGAGCACCAAGTGGAGGGTGGATTCTTTTTGAATGTTGTAATCAC 47731 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || |||| |||| || | ||| ||||| ||| | |||| | |||||||||| || Sbjct 47732 TAAGGGTTCTGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAGTCTCTGTTGGTCGGGTG 47791 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | ||||||||||| || || || ||| ||| ||||||| | || | || | Sbjct 47792 GGATTCCTTCCTTATCTTGGATCTTAGCTTTGACATTTTCTATCGAGTCAGAAGGCTCCA 47851 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | || || ||||| ||||||| ||| || || || |||||||| Sbjct 47852 CTTCCAGAGTGATTGTTTTTCCTGTCAAAGTCTTGACGAAGATTTGCAT 47900 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| || ||| | || || ||||| || || || || || ||||||||||| || Sbjct 46433 CCTCCTCTCAGTCTCAGGACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAATCACTC 46492 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | || || || || ||||||||| | |||| ||| ||||| ||| ||| Sbjct 46493 AGAGTGCGGCCATCCTCCAACTGCTTGCCAGCGAAGATCAGACGTTGTTGATCGGGAGGA 46552 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| ||||| ||||| ||||| | || || | |||| || || Sbjct 46553 ATTCCTTCTTTGTCTTGGATTTTCGCCTTTACGTTCTCGATCGAATCGGATGGCTCAACT 46612 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | ||||||||| || || |||| || || || || || |||||| Sbjct 46613 TCGAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCATA 46660 >seq1485 Length=353179 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 14986 TCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTAT 15045 ||||| || |||||||| || || || ||| | ||||||| || ||||| ||| | Sbjct 325262 TCTTTCTGGATGTTGTAGTCACTAAGGGTTCGACCATCTTCTAGCTGCTTGCCGGCGAAG 325203 Query 15046 ATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATT 15105 || | ||||||||| || || || ||||| ||||| ||| || || ||| || Sbjct 325202 ATAAGACGCTGTTGATCTGGGGGGATACCTTCTTTGTCTTGAATCTTAGCCTTAACATTT 325143 Query 15106 TCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15165 || || | |||||| || || |||| ||| || || ||||| || || ||||| ||| Sbjct 325142 TCGATTGAGTCGCTAGGCTCGACCTCTAGGGTGATTGTCTTACCCGTGAGGGTTTTGACA 325083 Query 15166 AAAATTTGCAT 15176 ||||||||||| Sbjct 325082 AAAATTTGCAT 325072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357369785853500