Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19]
5,100 sequences; 155,865,547 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq968 131 2e-25
seq1485 89.7 5e-13
>seq968
Length=289341
Score = 131 bits (144), Expect = 2e-25
Identities = 169/231 (73%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|||||||| | ||||| || || ||||| || ||||| |||||||||||||| || ||
Sbjct 47443 ATTCCTCCTCTCAGCCTTAAGACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAGTCA 47502
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
|| | ||| | || |||| ||||| || ||| | ||||||| ||| ||||| ||
Sbjct 47503 CTCAGAGTTCGACCGTCTTCCAGCTGTTTACCGGCGAAGATCAATCTTTGTTGGTCGGGT 47562
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
|| || || || || || |||||||| |||| || | || | | ||| |||| |||
Sbjct 47563 GGGATTCCCTCCTTGTCCTGAATTTTGGCCTTGA-CGTTCTCGATCGAGTCAGAAGGCTC 47621
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| ||||| | ||||| || || ||||| || ||||| || |||||
Sbjct 47622 AACTTCCAGAGTGATAGTTTTTCCAGTCAGAGTCTTGACAAAGATCTGCAT 47672
>seq1485
Length=353179
Score = 89.7 bits (98), Expect = 5e-13
Identities = 150/217 (69%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 45125 CCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA 45184
||||||||| | |||||||| ||| || ||||| || || || || | |||| |
Sbjct 325287 CCTCAACACCAAGTGCAGCGTGCTTTCTTTCTGGATGTTGTAGTCACTAAGGGTTCGACC 325228
Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244
||| || | || || || ||| | || | || || || || || || || ||||||||
Sbjct 325227 ATCTTCTAGCTGCTTGCCGGCGAAGATAAGACGCTGTTGATCTGGGGGGATACCTTCTTT 325168
Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304
|||||||| || || | ||| | | |||| || |||||| || || || |
Sbjct 325167 GTCTTGAATCTTAGCCTTAACATTTTCGATTGAGTCGCTAGGCTCGACCTCTAGGGTGAT 325108
Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
|| || || || || ||||| |||||||||||||||
Sbjct 325107 TGTCTTACCCGTGAGGGTTTTGACAAAAATTTGCATC 325071
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451974384796000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |