Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1485 118 2e-21 seq968 109 1e-18 seq802 100 7e-16 >seq1485 Length=353179 Score = 118 bits (130), Expect = 2e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 199439 TCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498 || || |||| |||||||||| | || | |||||||| |||||||| ||||||||| Sbjct 325262 TCTTTCTGGATGTTGTAGTCACTAAGGGTTCGACCATCTTCTAGCTGCTTGCCGGCGAAG 325203 Query 199499 ATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGAT 199558 || |||||||| || || || || |||||| || |||||||| ||| || | Sbjct 325202 ATAAGACGCTGTTGATCTGGGGGGATACCTTCTTTGTCTTGAATCTTAGCCTTAACATTT 325143 Query 199559 TCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACA 199618 |||| | ||| | | || || || | ||||| |||||||||||||| ||||| ||| Sbjct 325142 TCGATTGAGTCGCTAGGCTCGACCTCTAGGGTGATTGTCTTACCCGTGAGGGTTTTGACA 325083 Query 199619 AAAATTTG 199626 |||||||| Sbjct 325082 AAAATTTG 325075 >seq968 Length=289341 Score = 109 bits (120), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 ||||||||||| | ||| ||||| |||||||| || | |||||| ||| || ||| | Sbjct 46442 AGTCTCAGGACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAATCACTCAGAGTGCGG 46501 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 ||||| |||| |||||| || |||||||| ||||| || || || ||| |||||||||| Sbjct 46502 CCATCCTCCAACTGCTTGCCAGCGAAGATCAGACGTTGTTGATCGGGAGGAATTCCTTCT 46561 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 || || || || ||| ||| |||| | || | || || || || | || Sbjct 46562 TTGTCTTGGATTTTCGCCTTTACGTTCTCGATCGAATCGGATGGCTCAACTTCGAGGGTA 46621 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || || | || ||||| || || || Sbjct 46622 ATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTG 46656 Score = 109 bits (120), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 || || | ||| || |||||||| ||||||||||||| ||||||||| || ||| | Sbjct 47455 AGCCTTAAGACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAGTCACTCAGAGTTCGA 47514 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 || ||||||||||| || ||||||||||| | | || ||||| || ||||| || Sbjct 47515 CCGTCTTCCAGCTGTTTACCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATTCCCTCC 47574 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 |||||||| || ||| ||| |||| | ||| | | || || |||| ||| Sbjct 47575 TTGTCCTGAATTTTGGCCTTGACGTTCTCGATCGAGTCAGAAGGCTCAACTTCCAGAGTG 47634 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| || ||||| || || Sbjct 47635 ATAGTTTTTCCAGTCAGAGTCTTGACAAAGATCTG 47669 >seq802 Length=67242 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 ||||||| |||||||| | ||| |||||| || | ||||||||| | ||| ||||| Sbjct 46563 AGTCTCAAAACAAGGTGTAAAGTACTCTCCTTCTGTATGTTGTAGTCTGACAACGTCCTG 46622 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 |||||||| ||| || ||||||||||| || || || ||||| ||| ||| |||||| Sbjct 46623 TAATCTTCCAACTGTTTGCCGGCGAAGATAAGCCGTTGTTGGTCAGGAGGAATGCCTTCT 46682 Query 199532 CGCTCCTGAATCTTTTGCTT 199551 ||||| || | ||| || Sbjct 46683 TTATCCTGTATGTATTGTTT 46702 Score = 95.1 bits (104), Expect = 3e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 |||||||||||||| || |||||||||||| ||||| ||| | || |||||| | ||| Sbjct 46654 CTTATCTTCGCCGGCAAACAGTTGGAAGATTACAGGACGTTGTCAGACTACAACATACAG 46595 Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACT 201026 || ||| |||| | ||||||||||||||||| Sbjct 46594 AAGGAGAGTACTTTACACCTTGTTTTGAGACT 46563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178844564841700