Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq968 113 5e-20 seq1485 82.4 9e-11 >seq968 Length=289341 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | | || || ||||| | || ||||||||||||||||||||| Sbjct 47446 CCTCCTCTCAGCCTTAAGACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAGTCACTC 47505 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| || |||| || ||||| || |||||||| ||||| | || ||||||| || Sbjct 47506 AGAGTTCGACCGTCTTCCAGCTGTTTACCGGCGAAGATCAATCTTTGTTGGTCGGGTGGG 47565 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||||||| || || ||||| || | | || ||| | || || Sbjct 47566 ATTCCCTCCTTGTCCTGAATTTTGGCCTTGACGTTCTCGATCGAGTCAGAAGGCTCAACT 47625 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||| ||||| || ||||| || || |||||||| ||||| Sbjct 47626 TCCAGAGTGATAGTTTTTCCAGTCAGAGTCTTGACAAAGATCTGCAT 47672 >seq1485 Length=353179 Score = 82.4 bits (90), Expect = 9e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440 |||||||| |||| || || || || ||||| |||||||| || || || | || Sbjct 325284 CAACACCAAGTGCAGCGTGCTTTCTTTCTGGATGTTGTAGTCACTAAGGGTTCGACCATC 325225 Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 || ||||||||||||||||| || | ||||| || || | || | | || ||||| Sbjct 325224 TTCTAGCTGCTTGCCGGCGAAGATAAGACGCTGTTGATCTGGGGGGATACCTTCTTTGTC 325165 Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGT 46560 ||||| ||| | | | | | |||||| | || || || | ||||| || Sbjct 325164 TTGAATCTTAGCCTTAACATTTTCGATTGAGTCGCTAGGCTCGACCTCTAGGGTGATTGT 325105 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| || ||||| ||||| |||||||| Sbjct 325104 CTTACCCGTGAGGGTTTTGACAAAAATTTGCAT 325072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565202366052000