Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1485 131 2e-25 seq968 96.9 3e-15 seq387 86.0 6e-12 >seq1485 Length=353179 Score = 131 bits (144), Expect = 2e-25 Identities = 159/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| |||||||| || || |||||| | || |||||| | | | Sbjct 325072 ATGCAAATTTTTGTCAAAACCCTCACGGGTAAGACAATCACCCTAGAGGTCGAGCCTAGC 325131 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 ||| | ||| |||| | || || | |||||||| || || ||| | || ||| Sbjct 325132 GACTCAATCGAAAATGTTAAGGCTAAGATTCAAGACAAAGAAGGTATCCCCCCAGATCAA 325191 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| ||||| || || | || ||||| | ||||||||| Sbjct 325192 CAGCGTCTTATCTTCGCCGGCAAGCAGCTAGAAGATGGTCGAACCCTTAGTGACTACAAC 325251 Query 38424 ATCCA-AAAGGAAGCGACGCTGCATTTGGTGCTG 38456 ||||| |||| |||| |||||||| |||||| || Sbjct 325252 ATCCAGAAAGAAAGC-ACGCTGCACTTGGTGTTG 325284 >seq968 Length=289341 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || || ||||| ||||| | || || ||| | | Sbjct 47900 ATGCAAATCTTCGTCAAGACTTTGACAGGAAAAACAATCACTCTGGAAGTGGAGCCTTCT 47841 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 ||| | ||| | |||| || |||| || || || ||||| || |||||||| Sbjct 47840 GACTCGATAGAAAATGTCAAAGCTAAGATCCAAGATAAGGAAGGAATCCCACCCGACCAA 47781 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | || || | ||| ||||| || || || |||| | ||||| | || |||||| Sbjct 47780 CAGAGACTGATCTTCGCCGGCAAGCAACTTGAGGACGGCAGAACCCTTAGTGATTACAAC 47721 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || ||||| ||| | || || || |||||||| || | |||| ||| Sbjct 47720 ATTCAAAAAGAATCCACCCTCCACTTGGTGCTCCGACTCCGAGGAGGC 47673 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || || ||||| ||||| | || || ||| | | Sbjct 47672 ATGCAGATCTTTGTCAAGACTCTGACTGGAAAAACTATCACTCTGGAAGTTGAGCCTTCT 47613 Query 38304 GAC---AGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 ||| | || | |||| | || | ||||| | ||||| |||||||| || ||||| Sbjct 47612 GACTCGATCGAG--AACG-TCAAGGCCAAAATTCAGGACAAGGAGGGAATCCCACCCGAC 47556 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 ||||| | | || | ||| || ||||||||||| |||| || || || | |||||| Sbjct 47555 CAACAAAGATTGATCTTCGCCGGTAAACAGCTGGAAGACGGTCGAACTCTGAGTGACTAC 47496 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||||||||||| | || || ||| | || | | ||||||| || Sbjct 47495 AATATCCAAAAGGAGTCAACTCTCCATCTCGTCTTAAGGCTGAGAGGAGG 47446 Score = 86.0 bits (94), Expect = 6e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| ||||| ||||| ||||| ||||||||| | || || ||| | | Sbjct 47445 AATGCAGATCTTCGTCAAAACTCTCACTGGCAAGACCATCACCTTGGAGGTTGAGCCGTC 47386 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | ||| | |||| || |||| |||||||||||||| ||| | ||||| Sbjct 47385 TGACTCTATTGAAAATGTGAAAGCCAAGATCCAGGACAAAGAGGGAATCCCCCCTGACCA 47326 Query 38363 ACAGCGGCTCAT 38374 |||||| || || Sbjct 47325 ACAGCGTCTGAT 47314 >seq387 Length=79051 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 |||||||| | || |||||||| || |||| ||||| |||||| |||| |||| | | Sbjct 24592 GGAATTCCACCTGATCAACAGCGTCTGATTTTTGCGGGTAAACAGTTGGAAGACGGGAGG 24651 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 ||||| | ||||||||||||||| || || || || ||| ||||| || | || || Sbjct 24652 ACCCTGAGCGACTACAACATCCAGAAAGAGAGTACCCTTCATCTGGTGTTGAGACTGCGA 24711 Query 38466 GGCGG 38470 || || Sbjct 24712 GGAGG 24716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500140913984000