Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq2120 226 1e-53 seq968 122 3e-22 seq1855 105 3e-17 >seq2120 Length=165649 Score = 226 bits (250), Expect = 1e-53 Identities = 500/737 (68%), Gaps = 22/737 (3%) Strand=Plus/Plus Query 450895 AATGTCTGTCAAAAAAGTAGCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGG 450954 |||||| | ||| || | ||||||| || || || || || || | |||||||| Sbjct 98265 AATGTCAGGTAAACAACCACCAATTGGCATAGACCTCGGTACAACATACAGTTGTGTAGG 98324 Query 450955 TGTTTACCAAAATGGAAATGTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCC 451014 || |||||||||||||| || || || || ||||||||| |||| |||||||||| Sbjct 98325 AGTGTACCAAAATGGAAAAGTTGAGATCATTGCAAATGACATGGGATATAGAACTACTCC 98384 Query 451015 T--TCATGGGTAAGTTTTACGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAAATCAATG 451072 | ||| | | ||| | ||| ||| | ||| | || || |||| ||| | | Sbjct 98385 CAGTTATGTGGCATTTT--CTGATGTAGATCGTCTTGTTGGAGAATCTGCAAAACAACAG 98442 Query 451073 -GTAAATTCAAATGCCAAAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTA 451131 || || || ||||| ||| || | ||||||||| | |||||||| | | ||| Sbjct 98443 AGTGCGTTGAACCCTCAAAA-CACTGTGTTTGATGCTAAGAGGTTAATTGGGAGAAAGTA 98501 Query 451132 TGATGATGATACTGTACAAAAAGAGAAAAAATTCTTTT--CTTATGATGTAGTAAATCAA 451189 |||||||| | | ||| | || | || || ||| | || || |||| Sbjct 98502 TGATGATGCATCAATTCAAGAGGACATGGC--TCATTGGCCTTTCAAAGT--TACATCAG 98557 Query 451190 AAAG-GA-AAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTG 451247 | | || || ||| ||| |||||| || ||||| ||| | | ||| ||| | Sbjct 98558 ATGGAGACAAACCCCGAATTGAAGTAACCTACAAAGGACAAAAAAGGTCATTTTATCCAG 98617 Query 451248 AAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTT 451307 ||||||||||| | |||||| | || |||||| |||||||||| ||| | ||| Sbjct 98618 AAGAAATTTCAGCCATGGTTTTAGGGAAGATGAAACAAACAGCAGAGTCATACTTAGGTG 98677 Query 451308 CTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAG 451367 || | |||||||| |||||||||| || |||||||||||| |||| || |||| Sbjct 98678 GGCCTTGTGAAGATGCAGTTGTTACTGTTCCTGCATATTTCAATGATTCACAGCGCCAAG 98737 Query 451368 CAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTA 451427 | ||||||||||| ||| ||| ||||| | ||||| ||| |||| || |||||||| | Sbjct 98738 CCACTAAAGATGCTGGAGTTATAGCTGGACTTAATGTCCTTAGAATCATCAATGAACCAA 98797 Query 451428 CAGCAGCTGCTCTAGCATATGGACTAGGA----AAATCAAAAGAAACAGA---AGaaaaa 451480 |||| |||||| | |||||||| || ||| |||||||||| ||| || Sbjct 98798 CAGCGGCTGCTATTGCATATGGGCT-GGACAAGAAATCAAAAGGTCAAGACCGTGAGCGC 98856 Query 451481 aaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAA 451540 ||| || | | ||||| | ||||| || || |||| || | | ||||||| Sbjct 98857 AATGTTCTTATTTTTGACCTAGGTGGTGGGACATTTGATGTCTCCATCTTGACAATTGAT 98916 Query 451541 GATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATT 451600 ||||| |||||||||| || | ||| |||| | || ||| | || || |||||| || Sbjct 98917 GATGGTATATTTGAAGTCAAATCCACCTCTGGTAACACGCATTTGGGCGGAGAAGATTTT 98976 Query 451601 GATAATGCAATTGTGGA 451617 || ||| ||| || || Sbjct 98977 GACAATAGAATGGTTGA 98993 Score = 123 bits (136), Expect = 1e-22 Identities = 268/386 (69%), Gaps = 20/386 (5%) Strand=Plus/Plus Query 451981 TAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCT 452040 ||| ||| ||||||| |||||||| |||||||||||||| |||||||||| |||||| | Sbjct 99357 TAAAAGCATAAATCCAGATGAAGCAGTTGCATATGGTGCAGCAGTTCAAGGTGCTATTTT 99416 Query 452041 AACAGG-TTCAGATGATGAA-AAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTA 452098 | | || || | | |||| ||||| | | || || || | ||||| || || || Sbjct 99417 ATCTGGCAACAAAAG-TGAAGAAATTCAG-CAAATGCTTCTAATTGATGTCACTCCACTT 99474 Query 452099 TCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGAA--CTT 452156 ||| | ||| | ||||| || |||||| | ||||||| | || || ||| || || Sbjct 99475 TCTTTGGGAATAGAAACTGCAGGTGGAGTTATGACTACACTCATCAA--GAGAAACTCTG 99532 Query 452157 CTATTCCTTGTAA--AAAGAGTCAA--ACATTTAGTAC-AGCAAGTGATAACCAACCAGG 452211 |||| || || || || ||| | ||| | || | || |||| || ||| | Sbjct 99533 CTATACC----AATCAATGAAACAAAGATATTCACAACTTACCAG-GATAGACAGCCAAG 99587 Query 452212 TGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGG 452271 ||| ||||| || | |||||||||| | ||||||||| ||| || ||| || || Sbjct 99588 TGTTTGCATTCAGGTTTATGAAGGAGAAAGAGCAATGACAAAAGACAACAAT-CTCTTGG 99646 Query 452272 AGAATTTACTCTTTCA-AACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTA 452330 | | || | | | || ||||| |||| |||||||| | ||| ||||| || | | Sbjct 99647 GGCAGTTCCACCTGCATGGCATTCTTCCTGCCCCAAGGGGTATTCCACAAATAGAGGTAA 99706 Query 452331 CCTATGATGTTGATGCAAATGGTATT 452356 | | |||||| |||| ||||||||| Sbjct 99707 CATTTGATGTCAATGCCAATGGTATT 99732 >seq968 Length=289341 Score = 122 bits (134), Expect = 3e-22 Identities = 162/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || ||||||| || || ||||| || || ||||| |||| Sbjct 46659 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATTACCCTCGAAGTTGAGCCATCC 46600 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 ||| || || | || ||||| ||||| || |||||||||||||| |||||| Sbjct 46599 GATTCGATCGAGAACGTAAAGGCGAAAATCCAAGACAAAGAAGGAATTCCTCCCGATCAA 46540 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||| | || ||| | || || || | || ||||| | ||| || ||||| || Sbjct 46539 CAACGTCTGATCTTCGCTGGCAAGCAGTTGGAGGATGGCCGCACTCTGAGTGATTACAAC 46480 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 ||| | ||||| |||| |||||||| || | |||||||||||| Sbjct 46479 ATTCAGAAGGAGTCAACTCTTCACTTGGTCCTGAGACTGAGAGGA 46435 Score = 86.0 bits (94), Expect = 2e-11 Identities = 154/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||| || ||||| || ||||| || || || | ||| Sbjct 47900 ATGCAAATCTTCGTCAAGACTTTGACAGGAAAAACAATCACTCTGGAAGTGGAGCCTTCT 47841 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || || ||| | | ||| || || ||||||||||||||||| || || || ||| Sbjct 47840 GACTCGATAGAAAATGTCAAAGCTAAGATCCAAGATAAGGAAGGAATCCCACCCGACCAA 47781 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | || ||| | || || |||||||| || || ||||| | ||||| || Sbjct 47780 CAGAGACTGATCTTCGCCGGCAAGCAACTTGAGGACGGCAGAACCCTTAGTGATTACAAC 47721 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 ||| | || || | || || ||||| || | |||| ||||| Sbjct 47720 ATTCAAAAAGAATCCACCCTCCACTTGGTGCTCCGACTCCGAGGA 47676 >seq1855 Length=164765 Score = 105 bits (116), Expect = 3e-17 Identities = 215/317 (68%), Gaps = 7/317 (2%) Strand=Plus/Plus Query 451247 GAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGT 451306 ||||| || || || ||| | || |||||||| || || || ||| || |||| Sbjct 25632 GAAGAGATCTCTTCCATGATCCTCGGAAAAATGAAGGAGACCGCTGAAGCCTACCTTGGA 25691 Query 451307 TCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAA 451366 | || || ||||| || ||||||| || ||||| ||||| ||| | || || || Sbjct 25692 AAGACCGTAACAGATGCCGTTGTTACTGTCCCAGCTTACTTCAACGATTCTCAGCGACAG 25751 Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426 || || || ||||| ||| |||||||| | || ||||| ||||| || || || || Sbjct 25752 GCCACCAAGGATGCTGGAGTGATTGCTGGACTTAACGTTCTCCGAATCATCAACGAGCCC 25811 Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACA-----GAAGaaaaaa 451481 || || ||||| | || || || || ||| || ||| |||||| | ||| || | Sbjct 25812 ACTGCCGCTGCCATCGCCTACGGTCT-GGACAAG-AAAGGAAACACCAGCGGAGAGAAGA 25869 Query 451482 aTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAG 451541 | | | | || ||| | || ||||||||| ||| ||| | || || ||||||| Sbjct 25870 ACGTCTGCATCTTCGATCTCGGCGGAGGAACTTTCGATGTGTCTATCCTGTCCATTGAAG 25929 Query 451542 ATGGGGTATTTGAAGTA 451558 |||| | ||||| ||| Sbjct 25930 ATGGTATCTTTGAGGTA 25946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975589299150800