Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq2120 345 3e-89 seq359 134 1e-25 seq1855 123 2e-22 >seq2120 Length=165649 Score = 345 bits (382), Expect = 3e-89 Identities = 966/1460 (66%), Gaps = 37/1460 (3%) Strand=Plus/Minus Query 517273 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 517332 |||||||||||||| | ||||||||| || || ||||| || | || || | ||||| Sbjct 99732 AATACCATTGGCATTGACATCAAATGTTACCTCTATTTGTGGAATACCCCTTGGGGCAGG 99673 Query 517333 TGGGATCCCTTCCAAATTAAA-TGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTT 517391 | || || | || | || || || ||| ||| || ||||| || | | || || Sbjct 99672 AAGAATGCCATGCAGGTGGAACTGCCCCAAGAG-ATTGTTGTCTTTTGTCATTGCTCTTT 99614 Query 517392 CACCCTCGAAAATTTGGATAGTAACTACAGTTTGAT---TATCTGAATAAGTTGTAAATA 517448 | || || ||| || || | || ||| || | | |||| |||||||| |||| Sbjct 99613 CTCCTTCATAAACCTGAAT-GCAA--ACACTTGGCTGTCTATCCTGGTAAGTTGTGAATA 99557 Query 517449 CTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCAC 517508 | | || || || || | | |||||| | || | | ||||||| |||| Sbjct 99556 TCTTTGTTTCATTGATTGGTATAGCAGAGTTTCTCTTGATGAGTGTAGTCATAACTCCAC 99497 Query 517509 CTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTT 517568 |||| ||||||| || | |||||| ||||||||||||| ||| | || | |||| || Sbjct 99496 CTGCAGTTTCTATTCCCAAAGAAAGTGGAGTGACATCAATTAGAAGCATTTGCTGAATTT 99437 Query 517569 TTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTT 517628 |||| | | ||| | |||||| |||||| || |||||||||||||| |||| Sbjct 99436 CTTCACTTTTGTTGCCAGATAAAATAGCACCTTGAACTGCTGCACCATATGCAACTGCTT 99377 Query 517629 CATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTC 517688 |||| ||||| | ||| ||| || | | || | ||| | | || ||||||||| Sbjct 99376 CATCTGGATTTATGCTTTTATTGAGCTCTCTATTCTGGAACATTTCTGCAAGAAGTTGCT 99317 Query 517689 TTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTAT 517748 ||||| || || |||| ||| ||||||||||| ||||| ||||| | ||| | | Sbjct 99316 GAACCTTTGGGATTCGAGTTGAGCCTCCAACTAAAACAATATCATGGA--TGTTTTCGCT 99259 Query 517749 CCAGTTT--TGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTC 517806 | || || ||| | | | |||| ||| ||||| || | |||| ||||| Sbjct 99258 CTTGTACCCTGCATCATCAAGAGCCTTTTGAACTGGTTCCAGTGTTTCCTTAAATAAGTC 99199 Query 517807 TGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCG 517864 | ||| || || || ||||| |||| || | | || | || || || || || | Sbjct 99198 TACACACAGATCCTCAAATTTTGCTC--GTGATATTGTTGTGTAAAAGTCCATGCCATTT 99141 Query 517865 AACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGT 517924 || |||||||| || || | || |||||| || || || || | ||| || Sbjct 99140 TGCAGAGAATCAAGCTCTATTGAAGCTTGAGTGCTGGATGAAAGAGCCCTTTTGGCCTTC 99081 Query 517925 TCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCA-AATCTGTTTTATA 517983 || ||| || | ||| || | ||| ||| || |||| ||| | | | Sbjct 99080 TCTGCTGCAGTTCGCAGTTGTCTCATGGCAC--GCTTGTT-ATTCTGAATATCCTCTCCT 99024 Query 517984 T--TTTCTCTTGAAATCTTCAACACACCATGTTA-CAAGACGATTATCAAAATCTTCACC 518040 ||||| |||||||| | ||| | | || | | | | ||| ||||||||||| || Sbjct 99023 GCCTTTCTTTTGAAATCCTGGACA-AGAAAGTCAACCATTCTATTGTCAAAATCTTCTCC 98965 Query 518041 TCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAA 518100 ||||| | || || || || || | | | |||| || | ||||| |||| | ||| Sbjct 98964 GCCCAAATGCGTGTTACCAGAGGTGGATTTGACTTCAAATATACCATCATCAATTGTCAA 98905 Query 518101 AAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTC 518160 | | |||||| || |||||||| | ||||||||||| ||||| || ||| Sbjct 98904 GATGGAGACATCAAATGTCCCACCACCTAGGTCAAAAATAAGAACATTGCGCTCACGGTC 98845 Query 518161 TTGG---------TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAAT 518211 ||| || || || || ||||| |||| |||||| || ||||||||||| || Sbjct 98844 TTGACCTTTTGATTTCTTGTCCAGCCCATATGCAATAGCAGCCGCTGTTGGTTCATTGAT 98785 Query 518212 AATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGA 518271 ||||| | |||||||| ||||| || ||| ||||||||||||||||| | ||||| Sbjct 98784 GATTCTAAGGACATTAAGTCCAGCTATAACTCCAGCATCTTTAGTGGCTTGGCGCTGTGA 98725 Query 518272 ATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTAC-TTCTTTACCAATATAAG 518330 ||| || ||||||||||||||||||| ||| ||||| | || ||| | || | Sbjct 98724 ATCATTGAAATATGCAGGAACAGTAACAACTGCATC-TTCACAAGGCCCACCTAAGTATG 98666 Query 518331 CGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATT 518390 ||| ||||||||||| || | ||||| ||| | |||||||| |||||| || || Sbjct 98665 ACTCTGCTGTTTGTTTCATCTTCCCTAAAACCATGGCTGAAATTTCTTCTGGATAAAATG 98606 Query 518391 GCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTT 518450 | | || || || | |||||||| ||||| | ||| | |||||| Sbjct 98605 ACCTTTTTTGTCCTTTGTAGGTTACTTCAATTCGGGGTTTGTCTCCATCTGATGTAACTT 98546 Query 518451 TAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTA 518510 | || ||||| | ||| || ||||| | |||| | | | ||| ||||||| Sbjct 98545 TGAAAGGCCAATGAGCCATGTCCTCTTGAATTGATGCATCATCATACTTTCTCCCAATTA 98486 Query 518511 ATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCAT 518570 | | || |||||||| | ||| || || || | ||| || | ||| || | | Sbjct 98485 ACCTCTTAGCATCAAACACAGTGTTTTGAGGGTTCAACGCACTCTGTTGTTTTGCAGATT 98426 Query 518571 CTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGAT-TACCT 518629 |||||| ||| | ||| || | ||||| ||||| ||||| || | || | || Sbjct 98425 CTCCAACAAGACGATCTACATCAGAAAATGCCACATAACTGGGAGTAGTTCTATATCCCA 98366 Query 518630 TGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTT 518689 || ||||| ||||| || |||||||| |||||||| | || ||||||||||| | ||| Sbjct 98365 TG-TCATTTGCAATGATCTCAACTTTTCCATTTTGGTACACTCCTACACAACTGTATGTT 98307 Query 518690 GTTCCTAAATCAATACCAAT 518709 || || | || || ||||| Sbjct 98306 GTACCGAGGTCTATGCCAAT 98287 >seq359 Length=215225 Score = 134 bits (148), Expect = 1e-25 Identities = 198/278 (71%), Gaps = 3/278 (1%) Strand=Plus/Minus Query 518072 ACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATA 518131 |||| |||| ||| | |||| || |||||| | |||||| ||| |||||||| | | Sbjct 175924 ACTTCAAAAACTCCGTTATCAATAGTCAAAAGGGACACATCAAAGGTACCACCACCAAGA 175865 Query 518132 TCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCA 518191 ||||| | ||| | ||| ||||| | || || || |||| ||| || |||| |||| Sbjct 175864 TCAAACACAAGGATATT--TTTCTCTCCCTCC-TTCTTGTCAATACCGTAGGCAATAGCA 175808 Query 518192 GCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCT 518251 || || || || || ||||| || |||| || || ||||||||||| ||| ||||| Sbjct 175807 GCGGCGGTGGGCTCGTTAATGATCCTCATTACGTTGAGACCAGCAATCACTCCAGCATCC 175748 Query 518252 TTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTT 518311 || || ||||| | ||| | ||||| || || ||||| ||||| | ||||| | || Sbjct 175747 TTGGTAGCTTGACGTTGAGCGTCGTTGAAGTAGGCAGGGACAGTGACGACGGCGTTCTTT 175688 Query 518312 ACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCAT 518349 || || || || || ||||| || |||| ||||| Sbjct 175687 ACCTCCTTTCCGATGTAAGCTTCCGCTGTTTCCTTCAT 175650 >seq1855 Length=164765 Score = 123 bits (136), Expect = 2e-22 Identities = 270/397 (68%), Gaps = 18/397 (5%) Strand=Plus/Minus Query 517251 TATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTT 517310 ||||| | || | || || |||||||| ||||| || | || || || ||||| || | Sbjct 27159 TATCAACAGCGGAGACGTTCAGAATACCGTTGGCGTCTACGTCGAAAGTAACTTCGATCT 27100 Query 517311 GAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTAT 517370 |||| || ||||| ||||||||||||| || | | || |||| || | || | Sbjct 27099 GAGGAACTCCTCTGGGAGCAGGTGGGATTCCGGAGAGCTCGAACTTTCCGAGGATGTTGT 27040 Query 517371 TATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTAACTACAGTTTGATTA 517429 |||| || || | ||| ||||||||| | | |||||| ||| || | | ||| ||| Sbjct 27039 TATCCTTGGTCATAGCTCGCTCACCCTCGTACACTTGGATGAGT-ACACCGGGTTGGTTA 26981 Query 517430 TCTGAATAAGTTGTAAA-----TACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTAT 517484 || | || || || || |||||| |||| | || || || | |||||| | Sbjct 26980 TCAGCGTAGGTGGTGAACTTCTGACTCTG--TTTTGT---GGGGATGGTGGCGTTTCTCT 26926 Query 517485 CAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACAT 517544 |||| |||||| | ||| || || || || | ||| || || ||||||| |||| Sbjct 26925 TGATAAGGGCGGTCATGACACCGCCAGCGGTCTCAATACCTAGGGAGAGAGGAGCCACAT 26866 Query 517545 CAACTAGGACAATATTTTGAAGTTTTTCATCAG-TTTG--ACCAACAAGAATAGCTGCTT 517601 ||| || | || || |||| ||| |||| |||| |||| || || || |||| Sbjct 26865 CAAGGAGAAGAAGATCCTGAA---CTTCCTCAGATTTGTCACCAGACAGGATGGCAGCTT 26809 Query 517602 GAATAGCAGCACCATATGCAACAGCTTCATCAGGATT 517638 | | |||||| || || |||||||| || ||||| || Sbjct 26808 GGACAGCAGCTCCGTAGGCAACAGCCTCGTCAGGGTT 26772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780569321200600