Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2120 147 3e-30 seq1855 140 4e-28 seq359 118 1e-21 >seq2120 Length=165649 Score = 147 bits (162), Expect = 3e-30 Identities = 210/291 (72%), Gaps = 11/291 (4%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || |||||||| || ||||| || || | || | ||| | |||||||||||| ||||| Sbjct 98978 TCAAAATCTTCTCCGCCCAAATGCGTGTTACCAGAGGTGGATTTGACTTCAAATATACCA 98919 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | ||||| | || | || |||||||| || |||||||| ||||||||||| || || Sbjct 98918 TCATCAATTGTCAAGATGGAGACATCAAATGTCCCACCACCTAGGTCAAAAATAAGAACA 98859 Query 7577 TT---CGTATCGTCGT---CTTT---GTTCTTATCGAGACCGTACGCGATAGCCGCCGCC 7627 || | | ||| | |||| ||||| || || || || || ||||| ||||| Sbjct 98858 TTGCGCTCACGGTCTTGACCTTTTGATTTCTTGTCCAGCCCATATGCAATAGCAGCCGCT 98799 Query 7628 GTTGGTTCATTAATAATACGAA-GACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGT 7686 ||||||||||| || || | || |||| || || ||||| ||| | | |||||||| || Sbjct 98798 GTTGGTTCATTGATGATTCTAAGGACA-TTAAGTCCAGCTATAACTCCAGCATCTTTAGT 98740 Query 7687 CGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTC 7737 ||||| || || ||||| || || || || || || || || || || || Sbjct 98739 GGCTTGGCGCTGTGAATCATTGAAATATGCAGGAACAGTAACAACTGCATC 98689 >seq1855 Length=164765 Score = 140 bits (154), Expect = 4e-28 Identities = 222/317 (70%), Gaps = 6/317 (2%) Strand=Plus/Minus Query 7502 ACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGG 7561 || ||||||||||| |||||||| | | || ||||| || || || || || || Sbjct 25945 ACCTCAAAGATACCATCTTCAATGGACAGGATAGACACATCGAAAGTTCCTCCGCCGAGA 25886 Query 7562 TCAAAAATGAGTACGTTCGTATC----GTCGTCTTT--GTTCTTATCGAGACCGTACGCG 7615 || || ||| |||||| | || | || ||| ||||| || |||||||| ||| Sbjct 25885 TCGAAGATGCAGACGTTCTTCTCTCCGCTGGTGTTTCCTTTCTTGTCCAGACCGTAGGCG 25826 Query 7616 ATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCC 7675 || || || || || || || || || || || ||| ||| || |||||||| | | Sbjct 25825 ATGGCAGCGGCAGTGGGCTCGTTGATGATTCGGAGAACGTTAAGTCCAGCAATCACTCCA 25766 Query 7676 GCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCG 7735 ||||| || || || ||||| || |||||||| ||||| || ||||| || || || || Sbjct 25765 GCATCCTTGGTGGCCTGTCGCTGAGAATCGTTGAAGTAAGCTGGGACAGTAACAACGGCA 25706 Query 7736 TCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATC 7795 || || || |||| || || || | ||| ||| | || |||||||| || | ||| Sbjct 25705 TCTGTTACGGTCTTTCCAAGGTAGGCTTCAGCGGTCTCCTTCATTTTTCCGAGGATCATG 25646 Query 7796 GATGAAATCTCTTCAGC 7812 || || |||||||| || Sbjct 25645 GAAGAGATCTCTTCGGC 25629 >seq359 Length=215225 Score = 118 bits (130), Expect = 1e-21 Identities = 195/279 (70%), Gaps = 3/279 (1%) Strand=Plus/Minus Query 7501 GACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAG 7560 ||||||||| | || ||||| | || | || |||||||| ||||||||||| || Sbjct 175925 GACTTCAAAAACTCCGTTATCAATAGTCAAAAGGGACACATCAAAGGTACCACCACCAAG 175866 Query 7561 GTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGC 7620 ||||| | || | || | || || | | ||||| || | |||||| || ||||| Sbjct 175865 ATCAAACACAAGGATATT--TTTC-TCTCCCTCCTTCTTGTCAATACCGTAGGCAATAGC 175809 Query 7621 CGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATC 7680 || || || || || ||||| || | | ||| || |||||||| | | ||||| Sbjct 175808 AGCGGCGGTGGGCTCGTTAATGATCCTCATTACGTTGAGACCAGCAATCACTCCAGCATC 175749 Query 7681 TTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGT 7740 || || ||||| ||||| | ||||| |||||||| ||||| || ||||| |||| | | Sbjct 175748 CTTGGTAGCTTGACGTTGAGCGTCGTTGAAGTAGGCAGGGACAGTGACGACGGCGTTCTT 175689 Query 7741 GACTTTCTTACCGAGATACGATTCCGCGATATCTTTCAT 7779 || | ||| |||| || | |||||| | || ||||| Sbjct 175688 TACCTCCTTTCCGATGTAAGCTTCCGCTGTTTCCTTCAT 175650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635092310284000