Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1485 113 3e-20 seq968 102 5e-17 >seq1485 Length=353179 Score = 113 bits (124), Expect = 3e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 34765 ACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTT 34824 ||||||| |||||||| | |||||||||||||| ||||| ||||| |||| |||| Sbjct 325288 ACCTCAACACCAAGTGCAGCGTGCTTTCTTTCTGGATGTTGTAGTCACTAAGGGTTCGAC 325229 Query 34825 CATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCT 34884 |||| || ||||| || ||||| || || || || || || ||| | || | || || | Sbjct 325228 CATCTTCTAGCTGCTTGCCGGCGAAGATAAGACGCTGTTGATCTGGGGGGATACCTTCTT 325169 Query 34885 TGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTA 34944 |||| |||||| || || | | || || || | | ||| || || | ||| | Sbjct 325168 TGTCTTGAATCTTAGCCTTAACATTTTCGATTGAGTCGCTAGGCTCGACCTCTAGGGTGA 325109 Query 34945 TGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || |||||||| || || ||||| || ||||| Sbjct 325108 TTGTCTTACCCGTGAGGGTTTTGACAAAAATTTGCAT 325072 >seq968 Length=289341 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| |||| ||| || || | || | || || || || || || ||||| Sbjct 47444 TTCCTCCTCTCAGCCTTAAGACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAGTCAC 47503 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 || |||| | || ||||||||||| ||||| || || | || ||| ||||| | | Sbjct 47504 TCAGAGTTCGACCGTCTTCCAGCTGTTTACCGGCGAAGATCAATCTTTGTTGGTCGGGTG 47563 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | ||||||||||| ||| || |||||| | ||||| ||| | ||||| Sbjct 47564 GGATTCCCTCCTTGTCCTGAATTTTGGCCTTGACGTTCTCGATCGAGTCAGAAGGCTCAA 47623 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || || |||||||| || |||||||| |||||||||||||| Sbjct 47624 CTTCCAGAGTGATAGTTTTTCCAGTCAGAGTCTTGACAAAGATCTGCAT 47672 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34754 TCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGA 34813 |||||| |||| |||| |||||||||| || || ||||||||||| || || Sbjct 46432 TCCTCCTCTCAGTCTCAGGACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAATCACT 46491 Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGG 34873 || | || |||| |||| ||| || || || || || || ||||| || || | || Sbjct 46492 CAGAGTGCGGCCATCCTCCAACTGCTTGCCAGCGAAGATCAGACGTTGTTGATCGGGAGG 46551 Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAAC 34933 | || || ||||| || ||| || ||| | ||||| || | |||||| Sbjct 46552 AATTCCTTCTTTGTCTTGGATTTTCGCCTTTACGTTCTCGATCGAATCGGATGGCTCAAC 46611 Query 34934 ATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 |||| ||| ||||| || || || | |||||||| |||||||||||| Sbjct 46612 TTCGAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCATA 46660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324613421992800