Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq2120 228 7e-54 seq1855 93.3 3e-13 seq2835 86.0 5e-11 >seq2120 Length=165649 Score = 228 bits (252), Expect = 7e-54 Identities = 390/554 (70%), Gaps = 24/554 (4%) Strand=Plus/Plus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 || || ||||| | || || ||||| |||||||| || || | |||||||| |||||| Sbjct 98287 ATTGGCATAGACCTCGGTACAACATACAGTTGTGTAGGAGTGTACCAAAATGGAAAAGTT 98346 Query 550055 GAAATTATTGCCAATGATCAAGGTA-ACAGAACTACTCCATCTTATGTTTCTTTCACGGA 550113 || || ||||| ||||| || || | | ||||||||||| |||||| | || | || Sbjct 98347 GAGATCATTGCAAATGA-CATGGGATATAGAACTACTCCCAGTTATGTGGCATTTTCTGA 98405 Query 550114 AACTGAACATTTAGTTGGTGATGCAGCAAAATATCA-AGCCACTGGTAATCCTACCAATA 550172 || | | | ||||| || | |||||| | || || | | || ||| || | Sbjct 98406 TGTAGATCGTCTTGTTGGAGAATCTGCAAAACAACAGAGTGCGTTG-AACCCTCAAAACA 98464 Query 550173 CTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAG 550232 || | ||||||||||| | |||||||| |||| | | ||||| | | |||| | | Sbjct 98465 CTGTGTTTGATGCTAAGAGGTTAATTGGGAGAAAGTATGATGATGCATCAATTCAAGAGG 98524 Query 550233 ATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGA---AAACCTTATATTGAAG 550289 | ||| |||||||||||| || |||| |||| ||||| ||||||| Sbjct 98525 ACATGGCTCATTGGCCTTTCAAA---GTTACATCAGATGGAGACAAACCCCGAATTGAAG 98581 Query 550290 CTACTCATGAAGGATCTGTTAAACA----ATTTTCACCAGAACAAATTTCATCTATGGTT 550345 || | ||||| ||| | ||||| |||||| |||||||| | |||||| Sbjct 98582 TAACCTACAAAGGACA----AAAAAGGTCATTTTATCCAGAAGAAATTTCAGCCATGGTT 98637 Query 550346 TTAATGAAAATGAAACAAACAGCC-AGTGCT--TTTGTTGGTCAAGAAGTTACGGATGCA 550402 ||| ||| |||||||||||||| ||| | || | ||| | || | | ||||| Sbjct 98638 TTAGGGAAGATGAAACAAACAGCAGAGTCATACTTAGGTGGGCCTT--GTGAAG-ATGCA 98694 Query 550403 GTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGA 550462 || | ||||| || |||||||| ||||| ||||| || ||||| ||||||||||||||| Sbjct 98695 GTTGTTACTGTTCCTGCATATTTCAATGATTCACAGCGCCAAGCCACTAAAGATGCTGGA 98754 Query 550463 CGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCA 550522 ||| |||||||||||||| ||| | || ||||||||||| || || ||||| ||||| Sbjct 98755 GTTATAGCTGGACTTAATGTCCTTAGAATCATCAATGAACCAACAGCGGCTGCTATTGCA 98814 Query 550523 TATGGACTTGATAA 550536 ||||| || || || Sbjct 98815 TATGGGCTGGACAA 98828 Score = 127 bits (140), Expect = 2e-23 Identities = 275/406 (68%), Gaps = 8/406 (2%) Strand=Plus/Plus Query 552198 AATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATT 552257 ||| |||| | ||||||||||| || ||||| |||||||| ||| |||||| |||||| Sbjct 99355 AATAAAAGCATAAATCCAGATGAAGCAGTTGCATATGGTGCAGCAGTTCAAGGTGCTATT 99414 Query 552258 CTTTCTGG--AC-AAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCT 552314 | ||||| || ||| ||| |||| | |||| || || || ||||| ||||| Sbjct 99415 TTATCTGGCAACAAAAGTGAAGAAATTCAGCAAATGCTTCTAATT---GATGTCACTCCA 99471 Query 552315 CTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACT 552374 || ||| | || ||||||| | || || ||||||||| || ||| | ||||| || Sbjct 99472 CTTTCTTTGGGAATAGAAACTGCAGGTGGAGTTATGACTACACTCATCAAGAGAAACTCT 99531 Query 552375 ACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTT 552434 |||| || || || | |||| | || || |||| || | |||| Sbjct 99532 GCTATACCAATCAATGAAACAAAGATATTCACAACTTACCAGGATAGACAGCCAAGTGTT 99591 Query 552435 ACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTAC- 552493 ||||| ||| ||||||||||||| | | || ||||| || |||| ||||| | Sbjct 99592 TGCATTCAGGTTTATGAAGGAGAAAGAGCAATGACAAAAGACAACAATC-TCTTGGGGCA 99650 Query 552494 TTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTT 552553 || | | | || |||| |||||| || | || | || ||||| || || || || Sbjct 99651 GTTCCACCTGCATGGCATTCTTCCTGCCCCAAGGGGTATTCCACAAATAGAGGTAACATT 99710 Query 552554 CGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAAA 552599 ||| || |||||||||| ||| || | || | |||| ||| ||| Sbjct 99711 TGATGTCAATGCCAATGGTATTATGGAGGTTTCAGCTTATGACAAA 99756 Score = 109 bits (120), Expect = 4e-18 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 361703 AGACCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTCCC 361762 || ||||| || | | ||| ||||||||||| || || ||| ||| ||||| ||||| Sbjct 98822 AGCCCATATGCAATAGCAGCCGCTGTTGGTTCATTGATGATTCTAAGGACATTAAGTCCA 98763 Query 361763 GCTATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAACA 361822 ||||| | |||||| ||||||||| || |||| |||||| ||||||||||||||| Sbjct 98762 GCTATAACTCCAGCATCTTTAGTGGCTTGGCGCTGTGAATCATTGAAATATGCAGGAACA 98703 Query 361823 GTAATCACTGCTTTTTCA 361840 |||| ||||| | |||| Sbjct 98702 GTAACAACTGCATCTTCA 98685 >seq1855 Length=164765 Score = 93.3 bits (102), Expect = 3e-13 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 || || ||||| || | ||||| ||||| || || || || || || || || || || Sbjct 25698 GTAACAGATGCCGTTGTTACTGTCCCAGCTTACTTCAACGATTCTCAGCGACAGGCCACC 25757 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 || ||||||||| |||||||||||||| ||||| || || ||||| || || ||||| Sbjct 25758 AAGGATGCTGGAGTGATTGCTGGACTTAACGTTCTCCGAATCATCAACGAGCCCACTGCC 25817 Query 550511 GCTGCACTTGCATATGGACTTGATAA 550536 ||||| | || || || || || || Sbjct 25818 GCTGCCATCGCCTACGGTCTGGACAA 25843 >seq2835 Length=83423 Score = 86.0 bits (94), Expect = 5e-11 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 930654 AAAGTATTAATTGATTTTTCTTCACCAAATATTGCCAAAGAAATGCATATTGGACATTTG 930713 ||||| || | ||||| ||||| || || |||||||||||||||||| | |||||| | Sbjct 71825 AAAGTGTTTGTCGATTTCTCTTCTCCGAACATTGCCAAAGAAATGCATGTCGGACATCTC 71766 Query 930714 CGTTCTACCATTATTGGAGA 930733 || ||||||||||||||||| Sbjct 71765 CGATCTACCATTATTGGAGA 71746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029026288999000