Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq789 84.2 4e-11 >seq789 Length=365404 Score = 84.2 bits (92), Expect = 4e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 222032 ACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGC 222091 ||||||| ||||||||| || || ||||| | || | || | || |||| ||| | Sbjct 30009 ACCCTCTTCATGAAGAGATCTGGAATCCATAAAGCGTAGAATAAGTCCCTGGCCCGGGCC 29950 Query 222092 TCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGC 222151 || || || |||| || ||||| |||| || |||||||| |||||||||||||| Sbjct 29949 TCTTCTTTTCCAGTGTTCTTTCTCAGTTCCAGGAAATCAAAAATATCAGCGTGCCACGGT 29890 Query 222152 TCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 ||||| |||| || | | ||| |||| || Sbjct 29889 TCCAGGTAGATAGCGAATGAGCCAGGTCTCT 29859 Score = 84.2 bits (92), Expect = 4e-11 Identities = 91/117 (78%), Gaps = 3/117 (3%) Strand=Plus/Minus Query 221118 TCAC-CACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGT 221176 |||| ||| ||||| ||||| ||| |||||||| | || | |||| ||| | ||| Sbjct 33949 TCACACACCTGGAATTCTCCGCTGAGTACCCTCCTAAGATATATGTTACTGGTGTAAGGT 33890 Query 221177 TCGAT-GCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGC 221232 ||||| ||| |||||||||||||||||||| || || || || || |||||||| || Sbjct 33889 TCGATAGCT-TCGTTGTTGCCCAGGATCTGCGCTGTACTTGCTGTCGGCATGGGGGC 33834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928785586144000