Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq2120 237 1e-56 seq1855 138 7e-27 seq1337 95.1 8e-14 seq968 91.5 1e-12 seq732 89.7 3e-12 >seq2120 Length=165649 Score = 237 bits (262), Expect = 1e-56 Identities = 388/553 (70%), Gaps = 6/553 (1%) Strand=Plus/Plus Query 474330 CAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAG 474389 ||||||| || || | || || || ||||||||||||| || | |||||||| |||| Sbjct 98285 CAATTGGCATAGACCTCGGTACAACATACAGTTGTGTAGGAGTGTACCAAAATGGAAAAG 98344 Query 474390 TAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTG 474449 | || || ||||| |||||| || ||||||| || || ||||| | ||| ||| Sbjct 98345 TTGAGATCATTGCAAATGACATGGGATATAGAACTACTCCCAGTTATGTGGCATTTTCTG 98404 Query 474450 AAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATA 474509 | || | |||| ||||||| |||| ||| | || ||| | || ||| || | Sbjct 98405 ATGTAGATCGTCTTGTTGGAGAATCTGCAAAACAACAGAGTGCGTTGAACCCTCAAAACA 98464 Query 474510 CTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTG 474569 || | ||||||||||| || || ||||| | || | ||||||| | | | ||| | Sbjct 98465 CTGTGTTTGATGCTAAGAGGTTAATTGGGAGAAAGTATGATGATGCATCAATTCAAGAGG 98524 Query 474570 ATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGCAA 474629 | ||| |||||||||||| || || | | | ||| | ||||| || |||| || Sbjct 98525 ACATGGCTCATTGGCCTTTCAAAGTTACATCAGATGGAGACAAACCCCGAATTGAAGTAA 98584 Query 474630 TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCA 474689 || ||| ||| | ||||| || ||| ||||||| | |||||||||| | Sbjct 98585 CCTACAAAGGACAAAAAAGGTCATTTTATCCAGAAGAAATTTCAGCCATGGTTTTAGGGA 98644 Query 474690 AAATGAAACAAACCGC-GAGCTCATATCTTGGACAAG--AAGTAACTGATGCAGTAATTA 474746 | ||||||||||| || ||| ||||| ||| | | || | |||||||| ||| Sbjct 98645 AGATGAAACAAACAGCAGAG-TCATA-CTTAGGTGGGCCTTGTGA-AGATGCAGTTGTTA 98701 Query 474747 CTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTG 474806 ||||||| |||||||| |||||||| || || ||||| ||||||||||| ||| || | Sbjct 98702 CTGTTCCTGCATATTTCAATGATTCACAGCGCCAAGCCACTAAAGATGCTGGAGTTATAG 98761 Query 474807 CAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTC 474866 | || |||||||| | | || || |||||||||||||| || || |||| ||||| | Sbjct 98762 CTGGACTTAATGTCCTTAGAATCATCAATGAACCAACAGCGGCTGCTATTGCATATGGGC 98821 Query 474867 TTGATAAGAATTC 474879 | || ||||| || Sbjct 98822 TGGACAAGAAATC 98834 Score = 159 bits (176), Expect = 2e-33 Identities = 335/492 (68%), Gaps = 8/492 (2%) Strand=Plus/Plus Query 475695 TCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCAAAAATAAGAGAAATGCTTT 475754 ||||||| |||||| | || ||||| ||||| |||| ||||| | || | ||| Sbjct 99269 TCCATGATATTGTTTTAGTTGGAGGCTCAACTCGAATCCCAAAGGTTCAGCAACTTCTTG 99328 Query 475755 CATCATATTTTAATGGTAAAAAGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGCAT 475814 || | || | || | || | ||| |||| ||||||| |||||||| ||||||| Sbjct 99329 CAGAAATGTTCCAGAATAGAGAGCTCAATAAAAGCATAAATCCAGATGAAGCAGTTGCAT 99388 Query 475815 ATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAATCAGACG---AGAAACTAAATA 475871 |||| || || || |||| ||||||||||| || ||| || | | ||||| | | | Sbjct 99389 ATGGTGCAGCAGTTCAAGGTGCTATTTTATCTGG-CAA-CAAAAGTGAAGAAATTCAGCA 99446 Query 475872 ATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTA 475931 | || | || |||| || ||||||||||| || || | ||||| | || || ||| Sbjct 99447 A-ATGCTTCTAATTGATGTCACTCCACTTTCTTTGGGAATAGAAACTGCAGGTGGAGTTA 99505 Query 475932 TGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCA 475991 |||||| || || | ||||| || |||| ||| ||| || |||| |||| | | Sbjct 99506 TGACTACACTCATCAAGAGAAACTCTGCTATACCAATCAATGAAACAAAGATATTCACAA 99565 Query 475992 CTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCA 476051 |||| |||| || ||| ||| ||| || | | |||||| |||||| | | | Sbjct 99566 CTTACCAGGATAGACAGCCAAGTGTTTGCATTCAGGTTTATGAAGGAGAAAGAGCAATGA 99625 Query 476052 CTAAAGATAATAACAAACTTGGAAC-TTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGA 476110 | ||||| || || ||||| | || | || | || |||| |||||| || || Sbjct 99626 CAAAAGACAACAA-TCTCTTGGGGCAGTTCCACCTGCATGGCATTCTTCCTGCCCCAAGG 99684 Query 476111 GGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACT 476170 || |||| ||||| || || || |||||| | |||| ||||||||| | | ||| | Sbjct 99685 GGTATTCCACAAATAGAGGTAACATTTGATGTCAATGCCAATGGTATTATGGAGGTTTCA 99744 Query 476171 GCTTGTGATAAA 476182 |||| ||| ||| Sbjct 99745 GCTTATGACAAA 99756 >seq1855 Length=164765 Score = 138 bits (152), Expect = 7e-27 Identities = 267/391 (68%), Gaps = 6/391 (2%) Strand=Plus/Plus Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAA 475852 || ||||| || |||||||| || ||||||||||||||||| || || | || ||| | Sbjct 26772 AACCCTGACGAGGCTGTTGCCTACGGAGCTGCTGTCCAAGCTGCCATCCTGTCTGGTGAC 26831 Query 475853 TCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTT 475912 | ||| || | | || || | || |||| || |||| || || ||||| || Sbjct 26832 AAATCTGAGGAAGTTCAGGATCTTCTTCTCCTTGATGTGGCTCCTCTCTCCCTAGGTATT 26891 Query 475913 GAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAA 475972 || || | ||| || | ||||| ||||| | ||||| | | ||||| |||| Sbjct 26892 GAGACCGCTGGCGGTGTCATGACCGCCCTTATCAAGAGAAACGCCACCATCCCCA-CAAA 26950 Query 475973 AAA---TCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATC 476029 | | ||| |||| | |||| || ||||||| ||| | |||| ||||||| | Sbjct 26951 ACAGAGTCAGAAGT--TCACCACCTACGCTGATAACCAACCCGGTGTACTCATCCAAGTG 27008 Query 476030 TTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAA 476089 | || ||||| || | || || ||||| |||| || |||| || | || Sbjct 27009 TACGAGGGTGAGCGAGCTATGACCAAGGATAACAACATCCTCGGAAAGTTCGAGCTCTCC 27068 Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 || || || ||||||||||||||||||||||| || ||||||||||| || | || || Sbjct 27069 GGAATCCCACCTGCTCCCAGAGGAGTTCCTCAGATCGAAGTTACTTTCGACGTAGACGCC 27128 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATA 476180 || |||||||| || || | ||| ||||| Sbjct 27129 AACGGTATTCTGAACGTCTCCGCTGTTGATA 27159 >seq1337 Length=66774 Score = 95.1 bits (104), Expect = 8e-14 Identities = 95/121 (79%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTA-GAGT 480610 ||||| || || ||||||||||| ||||| ||||| || || || || |||| |||| Sbjct 41078 CGAAGTCGAAGAACAAGATGAAGGGTACTCTCTTTCTGAATGTTGTAGTC-GCTAAGAGT 41020 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || |||||| | ||||| ||||| ||||||||||||||||| || |||||||| || Sbjct 41019 TCGACCATCTTCCAACTGCTTCCCAGCGAAAATAAGACGTTGTTGGTCGGGAGGAATACC 40960 Query 480671 T 480671 | Sbjct 40959 T 40959 >seq968 Length=289341 Score = 91.5 bits (100), Expect = 1e-12 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || || ||||| || | || || || |||||| || || |||||| || ||| Sbjct 47680 CGGAGTCGGAGCACCAAGTGGAGGGTGGATTCTTTTTGAATGTTGTAATCACTAAGGGTT 47739 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 ||| || ||||||||||| || || || || || | ||||| || || || |||||| Sbjct 47740 CTGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAGTCTCTGTTGGTCGGGTGGGATTCCT 47799 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 ||||| ||||| ||||| ||||||| ||| || | |||| | ||| || Sbjct 47800 TCCTTATCTTGGATCTTAGCTTTGACATTTTCTATCGAGTCAGAAGGCTCCACTTCCAGA 47859 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| || || | |||||| ||||| ||||| Sbjct 47860 GTGATTGTTTTTCCTGTCAAAGTCTTGACGAAGATTTG 47897 Score = 87.8 bits (96), Expect = 1e-11 Identities = 127/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || |||||| ||||| | | ||| || | ||||| ||||| || || ||||||||| Sbjct 46481 TTGTAATCACTCAGAGTGCGGCCATCCTCCAACTGCTTGCCAGCGAAGATCAGACGTTGT 46540 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||| |||||||||||||| |||||||| || || || || || || | ||| Sbjct 46541 TGATCGGGAGGAATTCCTTCTTTGTCTTGGATTTTCGCCTTTACGTTCTCGATCGAATCG 46600 Query 480714 G-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || | || ||| |||||||| || || || || | ||||| ||||| || || Sbjct 46601 GATGGCTCAA-CTTCGAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTG 46656 >seq732 Length=602015 Score = 89.7 bits (98), Expect = 3e-12 Identities = 94/121 (78%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 474692 ATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGT 474750 ||||| ||||| || ||| ||||||| ||||| |||||| || ||||| | ||||| Sbjct 275191 ATGAAGCAAACAGCTGAGG-CATATCTGGGACAGAAAGTAAACGAGGCAGTGGTCACTGT 275133 Query 474751 TCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGG 474810 |||||| || || || || ||||| || || || ||||||||||| | || |||||||| Sbjct 275132 TCCAGCTTACTTCAACGACTCTCAGCGACAGGCTACTAAAGATGCCGCAACCATTGCAGG 275073 Query 474811 T 474811 | Sbjct 275072 T 275072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267960436254800